Literature DB >> 22328767

Draft genome of Pseudomonas stutzeri strain ZoBell (CCUG 16156), a marine isolate and model organism for denitrification studies.

Arantxa Peña1, Antonio Busquets, Margarita Gomila, Rafael Bosch, Balbina Nogales, Elena García-Valdés, Jorge Lalucat, Antonio Bennasar.   

Abstract

Pseudomonas stutzeri strain ZoBell, formerly a strain of Pseudomonas perfectomarina (CCUG 16156 = ATCC 14405), is a model organism for denitrification. It was isolated by ZoBell in 1944 from a marine sample, and here we report the first genome draft of a strain assigned to genomovar 2 of the species P. stutzeri.

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Year:  2012        PMID： 22328767      PMCID： PMC3294799          DOI： 10.1128/JB.06648-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

1.  Complete genome sequence of the nitrogen-fixing and rhizosphere-associated bacterium Pseudomonas stutzeri strain DSM4166.

Authors:  Haiying Yu; Menglong Yuan; Wei Lu; Jian Yang; Shuxian Dai; Qin Li; Zhimin Yang; Jie Dong; Lilian Sun; Zhiping Deng; Wei Zhang; Ming Chen; Shuzhen Ping; Yunlei Han; Yuhua Zhan; Yongliang Yan; Qi Jin; Min Lin
Journal:  J Bacteriol       Date:  2011-04-22       Impact factor: 3.490

Review 2.  Cell biology and molecular basis of denitrification.

Authors:  W G Zumft
Journal:  Microbiol Mol Biol Rev       Date:  1997-12       Impact factor: 11.056

Review 3.  Biology of Pseudomonas stutzeri.

Authors:  Jorge Lalucat; Antoni Bennasar; Rafael Bosch; Elena García-Valdés; Norberto J Palleroni
Journal:  Microbiol Mol Biol Rev       Date:  2006-06       Impact factor: 11.056

4.  Complete genome sequence of the type strain Pseudomonas stutzeri CGMCC 1.1803.

Authors:  Ming Chen; Yongliang Yan; Wei Zhang; Wei Lu; Jin Wang; Shuzhen Ping; Min Lin
Journal:  J Bacteriol       Date:  2011-11       Impact factor: 3.490

5.  Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species.

Authors:  Aina Maria Cladera; Antonio Bennasar; Maria Barceló; Jorge Lalucat; Elena García-Valdés
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490

6.  Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501.

Authors:  Yongliang Yan; Jian Yang; Yuetan Dou; Ming Chen; Shuzhen Ping; Junping Peng; Wei Lu; Wei Zhang; Ziying Yao; Hongquan Li; Wei Liu; Sheng He; Lizhao Geng; Xiaobing Zhang; Fan Yang; Haiying Yu; Yuhua Zhan; Danhua Li; Zhanglin Lin; Yiping Wang; Claudine Elmerich; Min Lin; Qi Jin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-21       Impact factor: 11.205

7.  Shifting the genomic gold standard for the prokaryotic species definition.

Authors:  Michael Richter; Ramon Rosselló-Móra
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-23       Impact factor: 11.205

8.  Phylogenetic analysis and siderotyping as useful tools in the taxonomy of Pseudomonas stutzeri: description of a novel genomovar.

Authors:  Magdalena Mulet; Margarita Gomila; Christelle Gruffaz; Jean-Marie Meyer; Norberto J Palleroni; Jorge Lalucat; Elena García-Valdés
Journal:  Int J Syst Evol Microbiol       Date:  2008-10       Impact factor: 2.747

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  9 in total
  19 in total

1.  Characteristics of the cultivable bacteria from sediments associated with two deep-sea hydrothermal vents in Okinawa Trough.

Authors:  Qing-lei Sun; Ming-qing Wang; Li Sun
Journal:  World J Microbiol Biotechnol       Date:  2015-09-26       Impact factor: 3.312

2.  Complete genome sequence of the naphthalene-degrading bacterium Pseudomonas stutzeri AN10 (CCUG 29243).

Authors:  Isabel Brunet-Galmés; Antonio Busquets; Arantxa Peña; Margarita Gomila; Balbina Nogales; Elena García-Valdés; Jorge Lalucat; Antonio Bennasar; Rafael Bosch
Journal:  J Bacteriol       Date:  2012-12       Impact factor: 3.490

3.  Genome sequence of Pseudomonas stutzeri strain JM300 (DSM 10701), a soil isolate and model organism for natural transformation.

Authors:  Antonio Busquets; Arantxa Peña; Margarita Gomila; Rafael Bosch; Balbina Nogales; Elena García-Valdés; Jorge Lalucat; Antoni Bennasar
Journal:  J Bacteriol       Date:  2012-10       Impact factor: 3.490

4.  Purification and characterization of a dehalogenase from Pseudomonas stutzeri DEH130 isolated from the marine sponge Hymeniacidon perlevis.

Authors:  Jinyou Zhang; Xupeng Cao; Yanjuan Xin; Song Xue; Wei Zhang
Journal:  World J Microbiol Biotechnol       Date:  2013-03-31       Impact factor: 3.312

5.  Biochemical and biophysical characterization of the two isoforms of cbb3-type cytochrome c oxidase from Pseudomonas stutzeri.

Authors:  Hao Xie; Sabine Buschmann; Julian D Langer; Bernd Ludwig; Hartmut Michel
Journal:  J Bacteriol       Date:  2013-11-08       Impact factor: 3.490

6.  Genome sequence of the moderately halotolerant, arsenite-oxidizing bacterium Pseudomonas stutzeri TS44.

Authors:  Xiangyang Li; Jing Gong; Yao Hu; Lin Cai; Laurel Johnstone; Gregor Grass; Christopher Rensing; Gejiao Wang
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

7.  Whole-cell MALDI-TOF mass spectrometry and multilocus sequence analysis in the discrimination of Pseudomonas stutzeri populations: three novel genomovars.

Authors:  Claudia Scotta; Margarita Gomila; Magdalena Mulet; Jorge Lalucat; Elena García-Valdés
Journal:  Microb Ecol       Date:  2013-06-04       Impact factor: 4.552

8.  Draft Genome of Pseudomonas stutzeri Strain NF13, a Nitrogen Fixer Isolated from the Galapagos Rift Hydrothermal Vent.

Authors:  Arantxa Peña; Antonio Busquets; Margarita Gomila; Joan Mayol; Rafael Bosch; Balbina Nogales; Elena García-Valdés; Antonio Bennasar; Jorge Lalucat
Journal:  Genome Announc       Date:  2013-03-21

9.  Draft Genome of the Nitrogen-Fixing Bacterium Pseudomonas stutzeri Strain KOS6 Isolated from Industrial Hydrocarbon Sludge.

Authors:  Tatiana V Grigoryeva; Aleksandr V Laikov; Rimma P Naumova; Aleksandr I Manolov; Andrey K Larin; Irina Y Karpova; Tatiana A Semashko; Dmitry G Alexeev; Elena S Kostryukova; Rudolf Müller; Vadim M Govorun
Journal:  Genome Announc       Date:  2013-01-31

10.  Redundancy and modularity in membrane-associated dissimilatory nitrate reduction in Bacillus.

Authors:  Kim Heylen; Jan Keltjens
Journal:  Front Microbiol       Date:  2012-10-18       Impact factor: 5.640
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