Literature DB >> 21499548

Time-dependent and outflow boundary conditions for Dissipative Particle Dynamics.

Huan Lei1, Dmitry A Fedosov, George Em Karniadakis.   

Abstract

We propose a simple method to impose both no-slip boundary conditions at fluid-wall interfaces and at outflow boundaries in fully developed regions for Dissipative Particle Dynamics (DPD) fluid systems. The procedure to enforce the no-slip condition is based on a velocity-dependent shear force, which is a generalized force to represent the presence of the solid-wall particles and to maintain locally thermodynamic consistency. We show that this method can be implemented in both steady and time-dependent fluid systems and compare the DPD results with the continuum limit (Navier-Stokes) results. We also develop a force-adaptive method to impose the outflow boundary conditions for fully developed flow with unspecified outflow velocity profile or pressure value. We study flows over the backward-facing step and in idealized arterial bifurcations using a combination of the two new boundary methods with different flow rates. Finally, we explore the applicability of the outflow method in time-dependent flow systems. The outflow boundary method works well for systems with Womersley number of O(1), i.e., when the pressure and flowrate at the outflow are approximately in-phase.

Entities:  

Year:  2011        PMID: 21499548      PMCID: PMC3076898          DOI: 10.1016/j.jcp.2011.02.003

Source DB:  PubMed          Journal:  J Comput Phys        ISSN: 0021-9991            Impact factor:   3.553


  14 in total

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2.  Dissipative particle dynamics simulations of polymer chains: scaling laws and shearing response compared to DNA experiments.

Authors:  Vasileios Symeonidis; George Em Karniadakis; Bruce Caswell
Journal:  Phys Rev Lett       Date:  2005-08-12       Impact factor: 9.161

3.  Controlling density fluctuations in wall-bounded dissipative particle dynamics systems.

Authors:  Igor V Pivkin; George Em Karniadakis
Journal:  Phys Rev Lett       Date:  2006-05-26       Impact factor: 9.161

4.  Equation of motion for coarse-grained simulation based on microscopic description.

Authors:  Tomoyuki Kinjo; Shi-aki Hyodo
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-05-11

5.  Accurate coarse-grained modeling of red blood cells.

Authors:  Igor V Pivkin; George Em Karniadakis
Journal:  Phys Rev Lett       Date:  2008-09-12       Impact factor: 9.161

6.  Dissipative particle dynamics simulation of depletion layer and polymer migration in micro- and nanochannels for dilute polymer solutions.

Authors:  Dmitry A Fedosov; George Em Karniadakis; Bruce Caswell
Journal:  J Chem Phys       Date:  2008-04-14       Impact factor: 3.488

7.  Tunable-slip boundaries for coarse-grained simulations of fluid flow.

Authors:  J Smiatek; M P Allen; F Schmid
Journal:  Eur Phys J E Soft Matter       Date:  2008-04-21       Impact factor: 1.890

8.  Hydrodynamics from dissipative particle dynamics.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1995-08

9.  The use of the dimensionless Womersley number to characterize the unsteady nature of internal flow.

Authors:  C Loudon; A Tordesillas
Journal:  J Theor Biol       Date:  1998-03-07       Impact factor: 2.691

10.  Direct construction of mesoscopic models from microscopic simulations.

Authors:  Huan Lei; Bruce Caswell; George Em Karniadakis
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-02-16
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  14 in total

1.  111 years of Brownian motion.

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Journal:  Soft Matter       Date:  2016-07-11       Impact factor: 3.679

2.  A Multiple Time Stepping Algorithm for Efficient Multiscale Modeling of Platelets Flowing in Blood Plasma.

Authors:  Peng Zhang; Na Zhang; Yuefan Deng; Danny Bluestein
Journal:  J Comput Phys       Date:  2015-03-01       Impact factor: 3.553

3.  Transport dissipative particle dynamics model for mesoscopic advection-diffusion-reaction problems.

Authors:  Zhen Li; Alireza Yazdani; Alexandre Tartakovsky; George Em Karniadakis
Journal:  J Chem Phys       Date:  2015-07-07       Impact factor: 3.488

4.  Multiscale modeling and simulation of brain blood flow.

Authors:  Paris Perdikaris; Leopold Grinberg; George Em Karniadakis
Journal:  Phys Fluids (1994)       Date:  2016-02-08       Impact factor: 3.521

5.  Sub-cellular modeling of platelet transport in blood flow through microchannels with constriction.

Authors:  Alireza Yazdani; George Em Karniadakis
Journal:  Soft Matter       Date:  2016-05-11       Impact factor: 3.679

6.  Multiscale Particle-Based Modeling of Flowing Platelets in Blood Plasma Using Dissipative Particle Dynamics and Coarse Grained Molecular Dynamics.

Authors:  Peng Zhang; Chao Gao; Na Zhang; Marvin J Slepian; Yuefan Deng; Danny Bluestein
Journal:  Cell Mol Bioeng       Date:  2014-12-01       Impact factor: 2.321

7.  Parallel multiscale simulations of a brain aneurysm.

Authors:  Leopold Grinberg; Dmitry A Fedosov; George Em Karniadakis
Journal:  J Comput Phys       Date:  2013-07-01       Impact factor: 3.553

8.  Influence of particle size and shape on their margination and wall-adhesion: implications in drug delivery vehicle design across nano-to-micro scale.

Authors:  Michaela Cooley; Apoorva Sarode; Masoud Hoore; Dmitry A Fedosov; Samir Mitragotri; Anirban Sen Gupta
Journal:  Nanoscale       Date:  2018-08-16       Impact factor: 7.790

9.  Simulation of platelets suspension flowing through a stenosis model using a dissipative particle dynamics approach.

Authors:  Joao S Soares; Chao Gao; Yared Alemu; Marvin Slepian; Danny Bluestein
Journal:  Ann Biomed Eng       Date:  2013-05-22       Impact factor: 3.934

10.  Parameterizing the Morse Potential for Coarse-Grained Modeling of Blood Plasma.

Authors:  Na Zhang; Peng Zhang; Wei Kang; Danny Bluestein; Yuefan Deng
Journal:  J Comput Phys       Date:  2014-01-15       Impact factor: 3.553

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