Literature DB >> 16196799

Dissipative particle dynamics simulations of polymer chains: scaling laws and shearing response compared to DNA experiments.

Vasileios Symeonidis1, George Em Karniadakis, Bruce Caswell.   

Abstract

Dissipative particle dynamics simulations of several bead-spring representations of polymer chains in dilute solution are used to demonstrate the correct static scaling laws for the radius of gyration. Shear flow results for the wormlike chain simulating single DNA molecules compare well with average extensions from experiments, irrespective of the number of beads. However, coarse graining with more than a few beads degrades the agreement of the autocorrelation of the extension.

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Year:  2005        PMID: 16196799     DOI: 10.1103/PhysRevLett.95.076001

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  7 in total

1.  Mesoscopic simulation of single DNA dynamics in rotational flows.

Authors:  S Kumar Ranjith
Journal:  Eur Phys J E Soft Matter       Date:  2015-08-28       Impact factor: 1.890

2.  Time-dependent and outflow boundary conditions for Dissipative Particle Dynamics.

Authors:  Huan Lei; Dmitry A Fedosov; George Em Karniadakis
Journal:  J Comput Phys       Date:  2011-05-31       Impact factor: 3.553

3.  Transport dissipative particle dynamics model for mesoscopic advection-diffusion-reaction problems.

Authors:  Zhen Li; Alireza Yazdani; Alexandre Tartakovsky; George Em Karniadakis
Journal:  J Chem Phys       Date:  2015-07-07       Impact factor: 3.488

4.  Probing red blood cell mechanics, rheology and dynamics with a two-component multi-scale model.

Authors:  Xuejin Li; Zhangli Peng; Huan Lei; Ming Dao; George Em Karniadakis
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2014-08-06       Impact factor: 4.226

5.  Model predictions of deformation, embolization and permeability of partially obstructive blood clots under variable shear flow.

Authors:  Shixin Xu; Zhiliang Xu; Oleg V Kim; Rustem I Litvinov; John W Weisel; Mark Alber
Journal:  J R Soc Interface       Date:  2017-11       Impact factor: 4.118

Review 6.  DPD Modelling of the Self- and Co-Assembly of Polymers and Polyelectrolytes in Aqueous Media: Impact on Polymer Science.

Authors:  Karel Procházka; Zuzana Limpouchová; Miroslav Štěpánek; Karel Šindelka; Martin Lísal
Journal:  Polymers (Basel)       Date:  2022-01-20       Impact factor: 4.329

7.  Study on Large Deformation Behavior of Polyacrylamide Hydrogel Using Dissipative Particle Dynamics.

Authors:  Jincheng Lei; Shuai Xu; Ziqian Li; Zishun Liu
Journal:  Front Chem       Date:  2020-02-25       Impact factor: 5.221

  7 in total

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