Literature DB >> 16803187

Controlling density fluctuations in wall-bounded dissipative particle dynamics systems.

Igor V Pivkin1, George Em Karniadakis.   

Abstract

Dissipative Particle Dynamics (DPD) simulations of wall-bounded flows exhibit density fluctuations that depend strongly on the no-slip boundary condition and increase with the level of coarse graining. We develop an adaptive model for wall-particle interactions that eliminates such oscillations and can target prescribed density profiles. Comparisons are made with ideal no-slip boundary conditions and molecular dynamics simulations. The new model is general and can be used in other coarse-grained particle methods.

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Year:  2006        PMID: 16803187     DOI: 10.1103/PhysRevLett.96.206001

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  11 in total

1.  Time-dependent and outflow boundary conditions for Dissipative Particle Dynamics.

Authors:  Huan Lei; Dmitry A Fedosov; George Em Karniadakis
Journal:  J Comput Phys       Date:  2011-05-31       Impact factor: 3.553

2.  Quantifying Shear-Induced Deformation and Detachment of Individual Adherent Sickle Red Blood Cells.

Authors:  Yixiang Deng; Dimitrios P Papageorgiou; Hung-Yu Chang; Sabia Z Abidi; Xuejin Li; Ming Dao; George Em Karniadakis
Journal:  Biophys J       Date:  2018-12-18       Impact factor: 4.033

3.  Blood-plasma separation in Y-shaped bifurcating microfluidic channels: a dissipative particle dynamics simulation study.

Authors:  Xuejin Li; Aleksander S Popel; George Em Karniadakis
Journal:  Phys Biol       Date:  2012-04-04       Impact factor: 2.583

4.  Probing red blood cell mechanics, rheology and dynamics with a two-component multi-scale model.

Authors:  Xuejin Li; Zhangli Peng; Huan Lei; Ming Dao; George Em Karniadakis
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2014-08-06       Impact factor: 4.226

5.  Dynamic simulations show repeated narrowing maximizes DNA linearization in elastomeric nanochannels.

Authors:  Minsub Han; Byoung Choul Kim; Toshiki Matsuoka; M D Thouless; Shuichi Takayama
Journal:  Biomicrofluidics       Date:  2016-11-23       Impact factor: 2.800

6.  Conformation-dependent translocation of a star polymer through a nanochannel.

Authors:  Zhu Liu; Jiannan Liu; Mengying Xiao; Rong Wang; Yeng-Long Chen
Journal:  Biomicrofluidics       Date:  2014-09-10       Impact factor: 2.800

7.  Simulation of platelets suspension flowing through a stenosis model using a dissipative particle dynamics approach.

Authors:  Joao S Soares; Chao Gao; Yared Alemu; Marvin Slepian; Danny Bluestein
Journal:  Ann Biomed Eng       Date:  2013-05-22       Impact factor: 3.934

8.  Inflow/Outflow Boundary Conditions for Particle-Based Blood Flow Simulations: Application to Arterial Bifurcations and Trees.

Authors:  Kirill Lykov; Xuejin Li; Huan Lei; Igor V Pivkin; George Em Karniadakis
Journal:  PLoS Comput Biol       Date:  2015-08-28       Impact factor: 4.475

9.  Probing eukaryotic cell mechanics via mesoscopic simulations.

Authors:  Kirill Lykov; Yasaman Nematbakhsh; Menglin Shang; Chwee Teck Lim; Igor V Pivkin
Journal:  PLoS Comput Biol       Date:  2017-09-18       Impact factor: 4.475

10.  Patient-specific modeling of individual sickle cell behavior under transient hypoxia.

Authors:  Xuejin Li; E Du; Ming Dao; Subra Suresh; George Em Karniadakis
Journal:  PLoS Comput Biol       Date:  2017-03-13       Impact factor: 4.475

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