Literature DB >> 21482162

Frequency-selective heteronuclear dephasing and selective carbonyl labeling to deconvolute crowded spectra of membrane proteins by magic angle spinning NMR.

Nathaniel J Traaseth1, Gianluigi Veglia.   

Abstract

We present a new method that combines pan class="Chemical">carbonyl-selective labeling with frequency-selective heteronuclear recoupling to resolve the spectral overlap of magic angle spinning (MAS) NMR spectra of membrane proteins in fluid class="Chemical">pan class="Chemical">lipid membranes with broad lines and high redundancy in the primary sequence. We implemented this approach in both heteronuclear (15)N-(13)C(α) and homonuclear (13)C-(13)C dipolar assisted rotational resonance (DARR) correlation experiments. We demonstrate its efficacy for the membrane protein phospholamban reconstituted in fluid PC/PE/PA lipid bilayers. The main advantage of this method is to discriminate overlapped (13)C(α) resonances by strategically labeling the preceding residue. This method is highly complementary to (13)C(i-1)(')-(15)N(i)-(13)C(i)(α) and (13)C(i-1)(α)-(15)N(i-1)-(13)C(i)(') experiments to distinguish inter-residue spin systems at a minimal cost to signal-to-noise.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21482162      PMCID: PMC3328402          DOI: 10.1016/j.jmr.2011.03.013

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  70 in total

1.  Selective and extensive 13C labeling of a membrane protein for solid-state NMR investigations.

Authors:  M Hong; K Jakes
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2.  High-resolution molecular structure of a peptide in an amyloid fibril determined by magic angle spinning NMR spectroscopy.

Authors:  Christopher P Jaroniec; Cait E MacPhee; Vikram S Bajaj; Michael T McMahon; Christopher M Dobson; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

3.  Polarization-transfer methods in solid-state magic-angle-spinning NMR: adiabatic CN pulse sequences.

Authors:  René Verel; Beat H Meier
Journal:  Chemphyschem       Date:  2004-06-21       Impact factor: 3.102

4.  Proton assisted insensitive nuclei cross polarization.

Authors:  Józef R Lewandowski; Gaël De Paëpe; Robert G Griffin
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5.  Partial site-specific assignment of a uniformly (13)C, (15)N enriched membrane protein, light-harvesting complex 1 (LH1), by solid state NMR.

Authors:  Lei Huang; Ann E McDermott
Journal:  Biochim Biophys Acta       Date:  2008-01-26

6.  Assignment strategies for large proteins by magic-angle spinning NMR: the 21-kDa disulfide-bond-forming enzyme DsbA.

Authors:  Lindsay J Sperling; Deborah A Berthold; Terry L Sasser; Victoria Jeisy-Scott; Chad M Rienstra
Journal:  J Mol Biol       Date:  2010-04-13       Impact factor: 5.469

7.  Main-chain-directed strategy for the assignment of 1H NMR spectra of proteins.

Authors:  S W Englander; A J Wand
Journal:  Biochemistry       Date:  1987-09-22       Impact factor: 3.162

8.  Solid-state NMR reveals structural and dynamical properties of a membrane-anchored electron-carrier protein, cytochrome b5.

Authors:  Ulrich H N Dürr; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2007-05-09       Impact factor: 15.419

9.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

10.  Protein signal assignments using specific labeling and cell-free synthesis.

Authors:  Jianxia Shi; Jeffrey G Pelton; Ho S Cho; David E Wemmer
Journal:  J Biomol NMR       Date:  2004-03       Impact factor: 2.835

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  9 in total

1.  Spectral editing at ultra-fast magic-angle-spinning in solid-state NMR: facilitating protein sequential signal assignment by HIGHLIGHT approach.

Authors:  Songlin Wang; Isamu Matsuda; Fei Long; Yoshitaka Ishii
Journal:  J Biomol NMR       Date:  2016-01-19       Impact factor: 2.835

2.  Nano-mole scale sequential signal assignment by (1)H-detected protein solid-state NMR.

Authors:  Songlin Wang; Sudhakar Parthasarathy; Yiling Xiao; Yusuke Nishiyama; Fei Long; Isamu Matsuda; Yuki Endo; Takahiro Nemoto; Kazuo Yamauchi; Tetsuo Asakura; Mitsuhiro Takeda; Tsutomu Terauchi; Masatsune Kainosho; Yoshitaka Ishii
Journal:  Chem Commun (Camb)       Date:  2015-08-28       Impact factor: 6.222

3.  A structured loop modulates coupling between the substrate-binding and dimerization domains in the multidrug resistance transporter EmrE.

Authors:  James R Banigan; Anindita Gayen; Min-Kyu Cho; Nathaniel J Traaseth
Journal:  J Biol Chem       Date:  2014-11-18       Impact factor: 5.157

4.  De novo resonance assignment of the transmembrane domain of LR11/SorLA in E. coli membranes.

Authors:  Xiaoyan Ding; Riqiang Fu; Fang Tian
Journal:  J Magn Reson       Date:  2019-11-01       Impact factor: 2.229

5.  Combination of ¹⁵N reverse labeling and afterglow spectroscopy for assigning membrane protein spectra by magic-angle-spinning solid-state NMR: application to the multidrug resistance protein EmrE.

Authors:  James R Banigan; Anindita Gayen; Nathaniel J Traaseth
Journal:  J Biomol NMR       Date:  2013-03-29       Impact factor: 2.835

Review 6.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

7.  Identifying inter-residue resonances in crowded 2D (13)C- (13)C chemical shift correlation spectra of membrane proteins by solid-state MAS NMR difference spectroscopy.

Authors:  Yimin Miao; Timothy A Cross; Riqiang Fu
Journal:  J Biomol NMR       Date:  2013-05-25       Impact factor: 2.835

8.  Site-specific resolution of anionic residues in proteins using solid-state NMR spectroscopy.

Authors:  Jianping Li; Ampon Sae Her; Nathaniel J Traaseth
Journal:  J Biomol NMR       Date:  2020-06-08       Impact factor: 2.835

9.  Utilizing afterglow magnetization from cross-polarization magic-angle-spinning solid-state NMR spectroscopy to obtain simultaneous heteronuclear multidimensional spectra.

Authors:  James R Banigan; Nathaniel J Traaseth
Journal:  J Phys Chem B       Date:  2012-05-31       Impact factor: 2.991

  9 in total

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