Literature DB >> 26781951

Spectral editing at ultra-fast magic-angle-spinning in solid-state NMR: facilitating protein sequential signal assignment by HIGHLIGHT approach.

Songlin Wang1, Isamu Matsuda1, Fei Long1, Yoshitaka Ishii2,3.   

Abstract

This study demonstrates a novel spectral editing technique for protein solid-state NMR (SSNMR) to simplify the spectrum drastically and to reduce the ambiguity for protein main-chain signal assignments in fast magic-angle-spinning (MAS) conditions at a wide frequency range of 40-80 kHz. The approach termed HIGHLIGHT (Wang et al., in Chem Comm 51:15055-15058, 2015) combines the reverse (13)C, (15)N-isotope labeling strategy and selective signal quenching using the frequency-selective REDOR pulse sequence under fast MAS. The scheme allows one to selectively observe the signals of "highlighted" labeled amino-acid residues that precede or follow unlabeled residues through selectively quenching (13)CO or (15)N signals for a pair of consecutively labeled residues by recoupling (13)CO-(15)N dipolar couplings. Our numerical simulation results showed that the scheme yielded only ~15% loss of signals for the highlighted residues while quenching as much as ~90% of signals for non-highlighted residues. For lysine-reverse-labeled micro-crystalline GB1 protein, the 2D (15)N/(13)Cα correlation and 2D (13)Cα/(13)CO correlation SSNMR spectra by the HIGHLIGHT approach yielded signals only for six residues following and preceding the unlabeled lysine residues, respectively. The experimental dephasing curves agreed reasonably well with the corresponding simulation results for highlighted and quenched residues at spinning speeds of 40 and 60 kHz. The compatibility of the HIGHLIGHT approach with fast MAS allows for sensitivity enhancement by paramagnetic assisted data collection (PACC) and (1)H detection. We also discuss how the HIGHLIGHT approach facilitates signal assignments using (13)C-detected 3D SSNMR by demonstrating full sequential assignments of lysine-reverse-labeled micro-crystalline GB1 protein (~300 nmol), for which data collection required only 11 h. The HIGHLIGHT approach offers valuable means of signal assignments especially for larger proteins through reducing the number of resonance and clarifying multiple starting points in sequential assignment with enhanced sensitivity.

Entities:  

Keywords:  Fast MAS; HIGHLIGHT; Protein; Reverse labeling; Solid-state NMR; Spectral editing

Mesh:

Year:  2016        PMID: 26781951     DOI: 10.1007/s10858-016-0014-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  52 in total

1.  Selective and extensive 13C labeling of a membrane protein for solid-state NMR investigations.

Authors:  M Hong; K Jakes
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

2.  X-ray and NMR crystallography in an enzyme active site: the indoline quinonoid intermediate in tryptophan synthase.

Authors:  Jinfeng Lai; Dimitri Niks; Yachong Wang; Tatiana Domratcheva; Thomas R M Barends; Friedrich Schwarz; Ryan A Olsen; Douglas W Elliott; M Qaiser Fatmi; Chia-en A Chang; Ilme Schlichting; Michael F Dunn; Leonard J Mueller
Journal:  J Am Chem Soc       Date:  2010-12-10       Impact factor: 15.419

3.  Toxin-induced conformational changes in a potassium channel revealed by solid-state NMR.

Authors:  Adam Lange; Karin Giller; Sönke Hornig; Marie-France Martin-Eauclaire; Olaf Pongs; Stefan Becker; Marc Baldus
Journal:  Nature       Date:  2006-04-13       Impact factor: 49.962

4.  Molecular conformation and dynamics of the Y145Stop variant of human prion protein in amyloid fibrils.

Authors:  Jonathan J Helmus; Krystyna Surewicz; Philippe S Nadaud; Witold K Surewicz; Christopher P Jaroniec
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-24       Impact factor: 11.205

5.  A strong correlation between fusogenicity and membrane insertion depth of the HIV fusion peptide.

Authors:  Wei Qiang; Yan Sun; David P Weliky
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-24       Impact factor: 11.205

6.  Amyloid beta 42 peptide (Abeta42)-lowering compounds directly bind to Abeta and interfere with amyloid precursor protein (APP) transmembrane dimerization.

Authors:  Luise Richter; Lisa-Marie Munter; Julia Ness; Peter W Hildebrand; Muralidhar Dasari; Stephanie Unterreitmeier; Bruno Bulic; Michael Beyermann; Ronald Gust; Bernd Reif; Sascha Weggen; Dieter Langosch; Gerd Multhaup
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-02       Impact factor: 11.205

7.  Conformational dynamics in the selectivity filter of KcsA in response to potassium ion concentration.

Authors:  Manasi P Bhate; Benjamin J Wylie; Lin Tian; Ann E McDermott
Journal:  J Mol Biol       Date:  2010-06-19       Impact factor: 5.469

8.  Chemical shift referencing in MAS solid state NMR.

Authors:  Corey R Morcombe; Kurt W Zilm
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

9.  Aβ(1-42) fibril structure illuminates self-recognition and replication of amyloid in Alzheimer's disease.

Authors:  Yiling Xiao; Buyong Ma; Dan McElheny; Sudhakar Parthasarathy; Fei Long; Minako Hoshi; Ruth Nussinov; Yoshitaka Ishii
Journal:  Nat Struct Mol Biol       Date:  2015-05-04       Impact factor: 15.369

10.  Structure of the chemokine receptor CXCR1 in phospholipid bilayers.

Authors:  Sang Ho Park; Bibhuti B Das; Fabio Casagrande; Ye Tian; Henry J Nothnagel; Mignon Chu; Hans Kiefer; Klaus Maier; Anna A De Angelis; Francesca M Marassi; Stanley J Opella
Journal:  Nature       Date:  2012-10-21       Impact factor: 49.962

View more
  5 in total

1.  Improving the quality of oriented membrane protein spectra using heat-compensated separated local field experiments.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2019-08-28       Impact factor: 2.835

2.  Application of paramagnetic relaxation enhancements to accelerate the acquisition of 2D and 3D solid-state NMR spectra of oriented membrane proteins.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  Methods       Date:  2017-12-22       Impact factor: 3.608

3.  Progress in proton-detected solid-state NMR (SSNMR): Super-fast 2D SSNMR collection for nano-mole-scale proteins.

Authors:  Yoshitaka Ishii; Ayesha Wickramasinghe; Isamu Matsuda; Yuki Endo; Yuji Ishii; Yusuke Nishiyama; Takahiro Nemoto; Takayuki Kamihara
Journal:  J Magn Reson       Date:  2017-11-28       Impact factor: 2.229

4.  De novo resonance assignment of the transmembrane domain of LR11/SorLA in E. coli membranes.

Authors:  Xiaoyan Ding; Riqiang Fu; Fang Tian
Journal:  J Magn Reson       Date:  2019-11-01       Impact factor: 2.229

5.  Atomic-level differences between brain parenchymal- and cerebrovascular-seeded Aβ fibrils.

Authors:  Kathryn P Scherpelz; Songlin Wang; Peter Pytel; Rama S Madhurapantula; Atul K Srivastava; Joseph R Sachleben; Joseph Orgel; Yoshitaka Ishii; Stephen C Meredith
Journal:  Sci Rep       Date:  2021-01-08       Impact factor: 4.379

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.