Literature DB >> 22582831

Utilizing afterglow magnetization from cross-polarization magic-angle-spinning solid-state NMR spectroscopy to obtain simultaneous heteronuclear multidimensional spectra.

James R Banigan1, Nathaniel J Traaseth.   

Abstract

The time required for data acquisition and subsequent spectral assignment are limiting factors for determining biomolecular structure and dynamics using solid-state NMR spectroscopy. While strong magnetic dipolar couplings give rise to relatively broad spectra lines, the couplings also mediate the coherent magnetization transfer via the Hartmann-Hahn cross-polarization (HH-CP) experiment. This mechanism is used in nearly all backbone assignment experiments for carrying out polarization transfer between (1)H, (15)N, and (13)C. In this Article, we describe a general spectroscopic approach to use the residual or "afterglow" magnetization from the (15)N to (13)C selective HH-CP experiment to collect a second multidimensional heteronuclear data set. This approach allowed for the collection of two commonly used sequential assignment experiments (2D NCA and NCO or 3D NCACX and NCOCX) at the same time. Our "afterglow" technique was demonstrated with uniformly [(13)C,(15)N] and [1,3-(13)C] glycerol-labeled ubiquitin using instrumentation available on all standard solid-state NMR spectrometers configured for magic-angle-spinning. This method is compatible with several other sensitivity enhancement experiments and can be used as an isotopic filtering tool to reduce the spectral complexity and decrease the time needed for assignment.

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Year:  2012        PMID: 22582831      PMCID: PMC3418334          DOI: 10.1021/jp303269m

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  55 in total

1.  Selective and extensive 13C labeling of a membrane protein for solid-state NMR investigations.

Authors:  M Hong; K Jakes
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

Review 2.  Dynamic nuclear polarization at high magnetic fields.

Authors:  Thorsten Maly; Galia T Debelouchina; Vikram S Bajaj; Kan-Nian Hu; Chan-Gyu Joo; Melody L Mak-Jurkauskas; Jagadishwar R Sirigiri; Patrick C A van der Wel; Judith Herzfeld; Richard J Temkin; Robert G Griffin
Journal:  J Chem Phys       Date:  2008-02-07       Impact factor: 3.488

Review 3.  Multidimensional solid state NMR of anisotropic interactions in peptides and proteins.

Authors:  Benjamin J Wylie; Chad M Rienstra
Journal:  J Chem Phys       Date:  2008-02-07       Impact factor: 3.488

4.  High-resolution solid-state NMR studies on uniformly [13C,15N]-labeled ubiquitin.

Authors:  Karsten Seidel; Manuel Etzkorn; Henrike Heise; Stefan Becker; Marc Baldus
Journal:  Chembiochem       Date:  2005-09       Impact factor: 3.164

5.  Assignment strategies for large proteins by magic-angle spinning NMR: the 21-kDa disulfide-bond-forming enzyme DsbA.

Authors:  Lindsay J Sperling; Deborah A Berthold; Terry L Sasser; Victoria Jeisy-Scott; Chad M Rienstra
Journal:  J Mol Biol       Date:  2010-04-13       Impact factor: 5.469

6.  Proton-detected solid-state NMR reveals intramembrane polar networks in a seven-helical transmembrane protein proteorhodopsin.

Authors:  Meaghan E Ward; Lichi Shi; Evelyn Lake; Sridevi Krishnamurthy; Howard Hutchins; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Am Chem Soc       Date:  2011-10-07       Impact factor: 15.419

7.  Conformational disorder of membrane peptides investigated from solid-state NMR line widths and line shapes.

Authors:  Yongchao Su; Mei Hong
Journal:  J Phys Chem B       Date:  2011-08-18       Impact factor: 2.991

8.  Lipid-mediated folding/unfolding of phospholamban as a regulatory mechanism for the sarcoplasmic reticulum Ca2+-ATPase.

Authors:  Martin Gustavsson; Nathaniel J Traaseth; Christine B Karim; Elizabeth L Lockamy; David D Thomas; Gianluigi Veglia
Journal:  J Mol Biol       Date:  2011-03-17       Impact factor: 5.469

Review 9.  Solid-state NMR studies of amyloid fibril structure.

Authors:  Robert Tycko
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

10.  MAS solid-state NMR studies on the multidrug transporter EmrE.

Authors:  Vipin Agarwal; Uwe Fink; Shimon Schuldiner; Bernd Reif
Journal:  Biochim Biophys Acta       Date:  2007-10-02
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  16 in total

1.  Hybridization of TEDOR and NCX MAS solid-state NMR experiments for simultaneous acquisition of heteronuclear correlation spectra and distance measurements.

Authors:  T Gopinath; Songlin Wang; John Lee; Hideki Aihara; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2019-02-25       Impact factor: 2.835

2.  A structured loop modulates coupling between the substrate-binding and dimerization domains in the multidrug resistance transporter EmrE.

Authors:  James R Banigan; Anindita Gayen; Min-Kyu Cho; Nathaniel J Traaseth
Journal:  J Biol Chem       Date:  2014-11-18       Impact factor: 5.157

3.  Orphan spin operators enable the acquisition of multiple 2D and 3D magic angle spinning solid-state NMR spectra.

Authors:  T Gopinath; Gianluigi Veglia
Journal:  J Chem Phys       Date:  2013-05-14       Impact factor: 3.488

4.  A suite of pulse sequences based on multiple sequential acquisitions at one and two radiofrequency channels for solid-state magic-angle spinning NMR studies of proteins.

Authors:  Kshama Sharma; Perunthiruthy K Madhu; Kaustubh R Mote
Journal:  J Biomol NMR       Date:  2016-06-30       Impact factor: 2.835

5.  Orphan spin polarization: A catalyst for high-throughput solid-state NMR spectroscopy of proteins.

Authors:  T Gopinath; Gianluigi Veglia
Journal:  Annu Rep NMR Spectrosc       Date:  2016-06-07       Impact factor: 3.000

6.  Multiple acquisition of magic angle spinning solid-state NMR experiments using one receiver: application to microcrystalline and membrane protein preparations.

Authors:  T Gopinath; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2015-04       Impact factor: 2.229

7.  Combination of ¹⁵N reverse labeling and afterglow spectroscopy for assigning membrane protein spectra by magic-angle-spinning solid-state NMR: application to the multidrug resistance protein EmrE.

Authors:  James R Banigan; Anindita Gayen; Nathaniel J Traaseth
Journal:  J Biomol NMR       Date:  2013-03-29       Impact factor: 2.835

Review 8.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

9.  Afterglow Solid-State NMR Spectroscopy.

Authors:  Gili Abramov; Nathaniel J Traaseth
Journal:  Methods Mol Biol       Date:  2018

10.  Site-specific resolution of anionic residues in proteins using solid-state NMR spectroscopy.

Authors:  Jianping Li; Ampon Sae Her; Nathaniel J Traaseth
Journal:  J Biomol NMR       Date:  2020-06-08       Impact factor: 2.835

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