Literature DB >> 10382307

Selective and extensive 13C labeling of a membrane protein for solid-state NMR investigations.

M Hong1, K Jakes.   

Abstract

The selective and extensive 13C labeling of mostly hydrophobic amino acid residues in a 25 kDa membrane protein, the colicin Ia channel domain, is reported. The novel 13C labeling approach takes advantage of the amino acid biosynthetic pathways in bacteria and suppresses the synthesis of the amino acid products of the citric acid cycle. The selectivity and extensiveness of labeling significantly simplify the solid-state NMR spectra, reduce line broadening, and should permit the simultaneous measurement of multiple structural constraints. We show the assignment of most 13C resonances to specific amino acid types based on the characteristic chemical shifts, the 13C labeling pattern, and the amino acid composition of the protein. The assignment is partly confirmed by a 2D homonuclear double-quantum-filter experiment under magic-angle spinning. The high sensitivity and spectral resolution attained with this 13C-labeling protocol, which is termed TEASE for ten-amino acid selective and extensive labeling, are demonstrated.

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Year:  1999        PMID: 10382307     DOI: 10.1023/a:1008334930603

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  10 in total

1.  NMR studies of the structure and dynamics of membrane-bound bacteriophage Pf1 coat protein.

Authors:  K J Shon; Y Kim; L A Colnago; S J Opella
Journal:  Science       Date:  1991-05-31       Impact factor: 47.728

2.  Determination of membrane protein structure by rotational resonance NMR: bacteriorhodopsin.

Authors:  F Creuzet; A McDermott; R Gebhard; K van der Hoef; M B Spijker-Assink; J Herzfeld; J Lugtenburg; M H Levitt; R G Griffin
Journal:  Science       Date:  1991-02-15       Impact factor: 47.728

Review 3.  Structure-function of the channel-forming colicins.

Authors:  W A Cramer; J B Heymann; S L Schendel; B N Deriy; F S Cohen; P A Elkins; C V Stauffacher
Journal:  Annu Rev Biophys Biomol Struct       Date:  1995

4.  High-resolution conformation of gramicidin A in a lipid bilayer by solid-state NMR.

Authors:  R R Ketchem; W Hu; T A Cross
Journal:  Science       Date:  1993-09-10       Impact factor: 47.728

5.  Solid-state dipolar INADEQUATE NMR spectroscopy with a large double-quantum spectral width.

Authors:  M Hong
Journal:  J Magn Reson       Date:  1999-01       Impact factor: 2.229

6.  Translocation of inserted foreign epitopes by a channel-forming protein.

Authors:  K S Jakes; P K Kienker; S L Slatin; A Finkelstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205

7.  Crystal structure of colicin Ia.

Authors:  M Wiener; D Freymann; P Ghosh; R M Stroud
Journal:  Nature       Date:  1997-01-30       Impact factor: 49.962

8.  Improved labeling strategy for 13C relaxation measurements of methyl groups in proteins.

Authors:  A L Lee; J L Urbauer; A J Wand
Journal:  J Biomol NMR       Date:  1997-06       Impact factor: 2.835

Review 9.  NMR structural studies of membrane proteins.

Authors:  F M Marassi; S J Opella
Journal:  Curr Opin Struct Biol       Date:  1998-10       Impact factor: 6.809

10.  Ligand geometry of the ternary complex of 5-enolpyruvylshikimate-3-phosphate synthase from rotational-echo double-resonance NMR.

Authors:  L M McDowell; C A Klug; D D Beusen; J Schaefer
Journal:  Biochemistry       Date:  1996-04-30       Impact factor: 3.162

  10 in total
  55 in total

1.  Measurement of conformational constraints in an elastin-mimetic protein by residue-pair selected solid-state NMR.

Authors:  Mei Hong; R Andrew McMillan; Vincent P Conticello
Journal:  J Biomol NMR       Date:  2002-02       Impact factor: 2.835

2.  Solid-state NMR spectroscopy of protein complexes.

Authors:  Shangjin Sun; Yun Han; Sivakumar Paramasivam; Si Yan; Amanda E Siglin; John C Williams; In-Ja L Byeon; Jinwoo Ahn; Angela M Gronenborn; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2012

Review 3.  Structure determination of membrane proteins by NMR spectroscopy.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

Review 4.  Recent developments in solid-state magic-angle spinning, nuclear magnetic resonance of fully and significantly isotopically labelled peptides and proteins.

Authors:  Suzana K Straus
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-06-29       Impact factor: 6.237

5.  Spectral editing at ultra-fast magic-angle-spinning in solid-state NMR: facilitating protein sequential signal assignment by HIGHLIGHT approach.

Authors:  Songlin Wang; Isamu Matsuda; Fei Long; Yoshitaka Ishii
Journal:  J Biomol NMR       Date:  2016-01-19       Impact factor: 2.835

6.  Magic-angle spinning solid-state NMR of a 144 kDa membrane protein complex: E. coli cytochrome bo3 oxidase.

Authors:  Heather L Frericks; Donghua H Zhou; Lai Lai Yap; Robert B Gennis; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2006-09-09       Impact factor: 2.835

7.  Spectral editing: selection of methyl groups in multidimensional solid-state magic-angle spinning NMR.

Authors:  Stefan Jehle; Matthias Hiller; Kristina Rehbein; Anne Diehl; Hartmut Oschkinat; Barth-Jan van Rossum
Journal:  J Biomol NMR       Date:  2006-09-22       Impact factor: 2.835

8.  Triple resonance experiments for aligned sample solid-state NMR of (13)C and (15)N labeled proteins.

Authors:  Neeraj Sinha; Christopher V Grant; Sang Ho Park; Jonathan Miles Brown; Stanley J Opella
Journal:  J Magn Reson       Date:  2007-01-24       Impact factor: 2.229

9.  High resolution NMR spectroscopy of nanocrystalline proteins at ultra-high magnetic field.

Authors:  Lindsay J Sperling; Andrew J Nieuwkoop; Andrew S Lipton; Deborah A Berthold; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2009-12-02       Impact factor: 2.835

10.  Assigning large proteins in the solid state: a MAS NMR resonance assignment strategy using selectively and extensively 13C-labelled proteins.

Authors:  Victoria A Higman; Jeremy Flinders; Matthias Hiller; Stefan Jehle; Stefan Markovic; Sebastian Fiedler; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2009-07-17       Impact factor: 2.835

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