Literature DB >> 21481567

Computational pathology: challenges and promises for tissue analysis.

Thomas J Fuchs1, Joachim M Buhmann.   

Abstract

The histological assessment of human tissue has emerged as the key challenge for detection and treatment of cancer. A plethora of different data sources ranging from tissue microarray data to gene expression, proteomics or metabolomics data provide a detailed overview of the health status of a patient. Medical doctors need to assess these information sources and they rely on data driven automatic analysis tools. Methods for classification, grouping and segmentation of heterogeneous data sources as well as regression of noisy dependencies and estimation of survival probabilities enter the processing workflow of a pathology diagnosis system at various stages. This paper reports on state-of-the-art of the design and effectiveness of computational pathology workflows and it discusses future research directions in this emergent field of medical informatics and diagnostic machine learning.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21481567     DOI: 10.1016/j.compmedimag.2011.02.006

Source DB:  PubMed          Journal:  Comput Med Imaging Graph        ISSN: 0895-6111            Impact factor:   4.790


  54 in total

1.  Automated gleason grading on prostate biopsy slides by statistical representations of homology profile.

Authors:  Chaoyang Yan; Kazuaki Nakane; Xiangxue Wang; Yao Fu; Haoda Lu; Xiangshan Fan; Michael D Feldman; Anant Madabhushi; Jun Xu
Journal:  Comput Methods Programs Biomed       Date:  2020-05-26       Impact factor: 5.428

Review 2.  Evolution of the liver biopsy and its future.

Authors:  Dhanpat Jain; Richard Torres; Romulo Celli; Jeremy Koelmel; Georgia Charkoftaki; Vasilis Vasiliou
Journal:  Transl Gastroenterol Hepatol       Date:  2021-04-05

Review 3.  Deep learning in histopathology: the path to the clinic.

Authors:  Jeroen van der Laak; Geert Litjens; Francesco Ciompi
Journal:  Nat Med       Date:  2021-05-14       Impact factor: 53.440

4.  A supervised learning approach for Crohn's disease detection using higher-order image statistics and a novel shape asymmetry measure.

Authors:  Dwarikanath Mahapatra; Peter Schueffler; Jeroen A W Tielbeek; Joachim M Buhmann; Franciscus M Vos
Journal:  J Digit Imaging       Date:  2013-10       Impact factor: 4.056

5.  SparkGIS: Efficient Comparison and Evaluation of Algorithm Results in Tissue Image Analysis Studies.

Authors:  Furqan Baig; Mudit Mehrotra; Hoang Vo; Fusheng Wang; Joel Saltz; Tahsin Kurc
Journal:  Biomed Data Manag Graph Online Querying (2015)       Date:  2016-06-24

Review 6.  An Assessment of Imaging Informatics for Precision Medicine in Cancer.

Authors:  C Chennubhotla; L P Clarke; A Fedorov; D Foran; G Harris; E Helton; R Nordstrom; F Prior; D Rubin; J H Saltz; E Shalley; A Sharma
Journal:  Yearb Med Inform       Date:  2017-09-11

7.  SHIFT: speedy histopathological-to-immunofluorescent translation of whole slide images using conditional generative adversarial networks.

Authors:  Erik A Burlingame; Adam A Margolin; Joe W Gray; Young Hwan Chang
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03-06

Review 8.  Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review.

Authors:  Fuyong Xing; Lin Yang
Journal:  IEEE Rev Biomed Eng       Date:  2016-01-06

9.  Machine learning approaches to analyze histological images of tissues from radical prostatectomies.

Authors:  Arkadiusz Gertych; Nathan Ing; Zhaoxuan Ma; Thomas J Fuchs; Sadri Salman; Sambit Mohanty; Sanica Bhele; Adriana Velásquez-Vacca; Mahul B Amin; Beatrice S Knudsen
Journal:  Comput Med Imaging Graph       Date:  2015-08-20       Impact factor: 4.790

10.  GoIFISH: a system for the quantification of single cell heterogeneity from IFISH images.

Authors:  Anne Trinh; Inga H Rye; Vanessa Almendro; Aslaug Helland; Hege G Russnes; Florian Markowetz
Journal:  Genome Biol       Date:  2014-08-26       Impact factor: 13.583

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