Literature DB >> 33990804

Deep learning in histopathology: the path to the clinic.

Jeroen van der Laak1,2, Geert Litjens3, Francesco Ciompi3.   

Abstract

Machine learning techniques have great potential to improve medical diagnostics, offering ways to improve accuracy, reproducibility and speed, and to ease workloads for clinicians. In the field of histopathology, deep learning algorithms have been developed that perform similarly to trained pathologists for tasks such as tumor detection and grading. However, despite these promising results, very few algorithms have reached clinical implementation, challenging the balance between hope and hype for these new techniques. This Review provides an overview of the current state of the field, as well as describing the challenges that still need to be addressed before artificial intelligence in histopathology can achieve clinical value.

Entities:  

Year:  2021        PMID: 33990804     DOI: 10.1038/s41591-021-01343-4

Source DB:  PubMed          Journal:  Nat Med        ISSN: 1078-8956            Impact factor:   53.440


  93 in total

Review 1.  Artificial intelligence in healthcare.

Authors:  Kun-Hsing Yu; Andrew L Beam; Isaac S Kohane
Journal:  Nat Biomed Eng       Date:  2018-10-10       Impact factor: 25.671

Review 2.  A survey on deep learning in medical image analysis.

Authors:  Geert Litjens; Thijs Kooi; Babak Ehteshami Bejnordi; Arnaud Arindra Adiyoso Setio; Francesco Ciompi; Mohsen Ghafoorian; Jeroen A W M van der Laak; Bram van Ginneken; Clara I Sánchez
Journal:  Med Image Anal       Date:  2017-07-26       Impact factor: 8.545

3.  Automated deep-learning system for Gleason grading of prostate cancer using biopsies: a diagnostic study.

Authors:  Wouter Bulten; Hans Pinckaers; Hester van Boven; Robert Vink; Thomas de Bel; Bram van Ginneken; Jeroen van der Laak; Christina Hulsbergen-van de Kaa; Geert Litjens
Journal:  Lancet Oncol       Date:  2020-01-08       Impact factor: 41.316

4.  Computational pathology: an emerging definition.

Authors:  David N Louis; Georg K Gerber; Jason M Baron; Lyn Bry; Anand S Dighe; Gad Getz; John M Higgins; Frank C Kuo; William J Lane; James S Michaelson; Long P Le; Craig H Mermel; John R Gilbertson; Jeffrey A Golden
Journal:  Arch Pathol Lab Med       Date:  2014-09       Impact factor: 5.534

5.  Computational pathology: challenges and promises for tissue analysis.

Authors:  Thomas J Fuchs; Joachim M Buhmann
Journal:  Comput Med Imaging Graph       Date:  2011-04-09       Impact factor: 4.790

6.  Computer analysis of cell images.

Authors:  M L Mendelsohn; W A Kolman; B Perry; J M Prewitt
Journal:  Postgrad Med       Date:  1965-11       Impact factor: 3.840

7.  Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer.

Authors:  Babak Ehteshami Bejnordi; Mitko Veta; Paul Johannes van Diest; Bram van Ginneken; Nico Karssemeijer; Geert Litjens; Jeroen A W M van der Laak; Meyke Hermsen; Quirine F Manson; Maschenka Balkenhol; Oscar Geessink; Nikolaos Stathonikos; Marcory Crf van Dijk; Peter Bult; Francisco Beca; Andrew H Beck; Dayong Wang; Aditya Khosla; Rishab Gargeya; Humayun Irshad; Aoxiao Zhong; Qi Dou; Quanzheng Li; Hao Chen; Huang-Jing Lin; Pheng-Ann Heng; Christian Haß; Elia Bruni; Quincy Wong; Ugur Halici; Mustafa Ümit Öner; Rengul Cetin-Atalay; Matt Berseth; Vitali Khvatkov; Alexei Vylegzhanin; Oren Kraus; Muhammad Shaban; Nasir Rajpoot; Ruqayya Awan; Korsuk Sirinukunwattana; Talha Qaiser; Yee-Wah Tsang; David Tellez; Jonas Annuscheit; Peter Hufnagl; Mira Valkonen; Kimmo Kartasalo; Leena Latonen; Pekka Ruusuvuori; Kaisa Liimatainen; Shadi Albarqouni; Bharti Mungal; Ami George; Stefanie Demirci; Nassir Navab; Seiryo Watanabe; Shigeto Seno; Yoichi Takenaka; Hideo Matsuda; Hady Ahmady Phoulady; Vassili Kovalev; Alexander Kalinovsky; Vitali Liauchuk; Gloria Bueno; M Milagro Fernandez-Carrobles; Ismael Serrano; Oscar Deniz; Daniel Racoceanu; Rui Venâncio
Journal:  JAMA       Date:  2017-12-12       Impact factor: 56.272

Review 8.  Artificial intelligence in digital pathology - new tools for diagnosis and precision oncology.

Authors:  Kaustav Bera; Kurt A Schalper; David L Rimm; Vamsidhar Velcheti; Anant Madabhushi
Journal:  Nat Rev Clin Oncol       Date:  2019-08-09       Impact factor: 66.675

9.  Multi-class texture analysis in colorectal cancer histology.

Authors:  Jakob Nikolas Kather; Cleo-Aron Weis; Francesco Bianconi; Susanne M Melchers; Lothar R Schad; Timo Gaiser; Alexander Marx; Frank Gerrit Zöllner
Journal:  Sci Rep       Date:  2016-06-16       Impact factor: 4.379

10.  The Image Biomarker Standardization Initiative: Standardized Quantitative Radiomics for High-Throughput Image-based Phenotyping.

Authors:  Alex Zwanenburg; Martin Vallières; Mahmoud A Abdalah; Hugo J W L Aerts; Vincent Andrearczyk; Aditya Apte; Saeed Ashrafinia; Spyridon Bakas; Roelof J Beukinga; Ronald Boellaard; Marta Bogowicz; Luca Boldrini; Irène Buvat; Gary J R Cook; Christos Davatzikos; Adrien Depeursinge; Marie-Charlotte Desseroit; Nicola Dinapoli; Cuong Viet Dinh; Sebastian Echegaray; Issam El Naqa; Andriy Y Fedorov; Roberto Gatta; Robert J Gillies; Vicky Goh; Michael Götz; Matthias Guckenberger; Sung Min Ha; Mathieu Hatt; Fabian Isensee; Philippe Lambin; Stefan Leger; Ralph T H Leijenaar; Jacopo Lenkowicz; Fiona Lippert; Are Losnegård; Klaus H Maier-Hein; Olivier Morin; Henning Müller; Sandy Napel; Christophe Nioche; Fanny Orlhac; Sarthak Pati; Elisabeth A G Pfaehler; Arman Rahmim; Arvind U K Rao; Jonas Scherer; Muhammad Musib Siddique; Nanna M Sijtsema; Jairo Socarras Fernandez; Emiliano Spezi; Roel J H M Steenbakkers; Stephanie Tanadini-Lang; Daniela Thorwarth; Esther G C Troost; Taman Upadhaya; Vincenzo Valentini; Lisanne V van Dijk; Joost van Griethuysen; Floris H P van Velden; Philip Whybra; Christian Richter; Steffen Löck
Journal:  Radiology       Date:  2020-03-10       Impact factor: 29.146

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  51 in total

1.  The Porto European Cancer Research Summit 2021.

Authors:  Ulrik Ringborg; Anton Berns; Julio E Celis; Manuel Heitor; Josep Tabernero; Joachim Schüz; Michael Baumann; Rui Henrique; Matti Aapro; Partha Basu; Regina Beets-Tan; Benjamin Besse; Fátima Cardoso; Fátima Carneiro; Guy van den Eede; Alexander Eggermont; Stefan Fröhling; Susan Galbraith; Elena Garralda; Douglas Hanahan; Thomas Hofmarcher; Bengt Jönsson; Olli Kallioniemi; Miklós Kásler; Eva Kondorosi; Jan Korbel; Denis Lacombe; José Carlos Machado; José M Martin-Moreno; Francoise Meunier; Péter Nagy; Paolo Nuciforo; Simon Oberst; Júlio Oliveiera; Maria Papatriantafyllou; Walter Ricciardi; Alexander Roediger; Bettina Ryll; Richard Schilsky; Grazia Scocca; Raquel Seruca; Marta Soares; Karen Steindorf; Vincenzo Valentini; Emile Voest; Elisabete Weiderpass; Nils Wilking; Amanda Wren; Laurence Zitvogel
Journal:  Mol Oncol       Date:  2021-09-13       Impact factor: 6.603

Review 2.  Recent Advances of Deep Learning for Computational Histopathology: Principles and Applications.

Authors:  Yawen Wu; Michael Cheng; Shuo Huang; Zongxiang Pei; Yingli Zuo; Jianxin Liu; Kai Yang; Qi Zhu; Jie Zhang; Honghai Hong; Daoqiang Zhang; Kun Huang; Liang Cheng; Wei Shao
Journal:  Cancers (Basel)       Date:  2022-02-25       Impact factor: 6.639

3.  Unleashing the potential of digital pathology data by training computer-aided diagnosis models without human annotations.

Authors:  Niccolò Marini; Stefano Marchesin; Sebastian Otálora; Marek Wodzinski; Alessandro Caputo; Mart van Rijthoven; Witali Aswolinskiy; John-Melle Bokhorst; Damian Podareanu; Edyta Petters; Svetla Boytcheva; Genziana Buttafuoco; Simona Vatrano; Filippo Fraggetta; Jeroen van der Laak; Maristella Agosti; Francesco Ciompi; Gianmaria Silvello; Henning Muller; Manfredo Atzori
Journal:  NPJ Digit Med       Date:  2022-07-22

4.  StainCUT: Stain Normalization with Contrastive Learning.

Authors:  José Carlos Gutiérrez Pérez; Daniel Otero Baguer; Peter Maass
Journal:  J Imaging       Date:  2022-07-20

5.  Serum hormone levels and normal breast histology among premenopausal women.

Authors:  Mark E Sherman; Thomas de Bel; Michael G Heckman; Launia J White; Joshua Ogony; Melody Stallings-Mann; Tracy Hilton; Amy C Degnim; Robert A Vierkant; Tanya Hoskin; Matthew R Jensen; Laura Pacheco-Spann; Jill E Henry; Anna Maria Storniolo; Jodi M Carter; Stacey J Winham; Derek C Radisky; Jeroen van der Laak
Journal:  Breast Cancer Res Treat       Date:  2022-05-03       Impact factor: 4.624

6.  Security Evaluation of Financial and Insurance and Ruin Probability Analysis Integrating Deep Learning Models.

Authors:  Yang Yang
Journal:  Comput Intell Neurosci       Date:  2022-06-08

7.  HistoML, a markup language for representation and exchange of histopathological features in pathology images.

Authors:  Peiliang Lou; Chunbao Wang; Ruifeng Guo; Lixia Yao; Guanjun Zhang; Jun Yang; Yong Yuan; Yuxin Dong; Zeyu Gao; Tieliang Gong; Chen Li
Journal:  Sci Data       Date:  2022-07-08       Impact factor: 8.501

8.  AI Model for Prostate Biopsies Predicts Cancer Survival.

Authors:  Kevin Sandeman; Sami Blom; Ville Koponen; Anniina Manninen; Juuso Juhila; Antti Rannikko; Tuomas Ropponen; Tuomas Mirtti
Journal:  Diagnostics (Basel)       Date:  2022-04-20

9.  Scaling multi-instance support vector machine to breast cancer detection on the BreaKHis dataset.

Authors:  Hoon Seo; Lodewijk Brand; Lucia Saldana Barco; Hua Wang
Journal:  Bioinformatics       Date:  2022-06-24       Impact factor: 6.931

10.  Automated assessment of Ki-67 proliferation index in neuroendocrine tumors by deep learning.

Authors:  Tiina Vesterinen; Jenni Säilä; Sami Blom; Mirkka Pennanen; Helena Leijon; Johanna Arola
Journal:  APMIS       Date:  2021-11-22       Impact factor: 3.428

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