Literature DB >> 26742143

Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review.

Fuyong Xing, Lin Yang.   

Abstract

Digital pathology and microscopy image analysis is widely used for comprehensive studies of cell morphology or tissue structure. Manual assessment is labor intensive and prone to interobserver variations. Computer-aided methods, which can significantly improve the objectivity and reproducibility, have attracted a great deal of interest in recent literature. Among the pipeline of building a computer-aided diagnosis system, nucleus or cell detection and segmentation play a very important role to describe the molecular morphological information. In the past few decades, many efforts have been devoted to automated nucleus/cell detection and segmentation. In this review, we provide a comprehensive summary of the recent state-of-the-art nucleus/cell segmentation approaches on different types of microscopy images including bright-field, phase-contrast, differential interference contrast, fluorescence, and electron microscopies. In addition, we discuss the challenges for the current methods and the potential future work of nucleus/cell detection and segmentation.

Entities:  

Mesh:

Year:  2016        PMID: 26742143      PMCID: PMC5233461          DOI: 10.1109/RBME.2016.2515127

Source DB:  PubMed          Journal:  IEEE Rev Biomed Eng        ISSN: 1937-3333


  176 in total

1.  A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks.

Authors:  Gang Lin; Umesh Adiga; Kathy Olson; John F Guzowski; Carol A Barnes; Badrinath Roysam
Journal:  Cytometry A       Date:  2003-11       Impact factor: 4.355

2.  A call for bioimaging software usability.

Authors:  Anne E Carpenter; Lee Kamentsky; Kevin W Eliceiri
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

3.  Cell segmentation using coupled level sets and graph-vertex coloring.

Authors:  Sumit K Nath; Kannappan Palaniappan; Filiz Bunyak
Journal:  Med Image Comput Comput Assist Interv       Date:  2006

4.  Snakes, shapes, and gradient vector flow.

Authors:  C Xu; J L Prince
Journal:  IEEE Trans Image Process       Date:  1998       Impact factor: 10.856

5.  A unified framework for automated 3-d segmentation of surface-stained living cells and a comprehensive segmentation evaluation.

Authors:  Erlend Hodneland; Nickolay V Bukoreshtliev; Tilo W Eichler; Xue-Cheng Tai; Steffen Gurke; Arvid Lundervold; Hans-Hermann Gerdes
Journal:  IEEE Trans Med Imaging       Date:  2009-01-06       Impact factor: 10.048

6.  Cells segmentation from 3-D confocal images of early zebrafish embryogenesis.

Authors:  Cecilia Zanella; Matteo Campana; Barbara Rizzi; Camilo Melani; Gonzalo Sanguinetti; Paul Bourgine; Karol Mikula; Nadine Peyrieras; Alessandro Sarti
Journal:  IEEE Trans Image Process       Date:  2009-10-06       Impact factor: 10.856

7.  A computational approach to edge detection.

Authors:  J Canny
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  1986-06       Impact factor: 6.226

8.  Segmentation of confocal microscope images of cell nuclei in thick tissue sections.

Authors:  C Ortiz de Solórzano; E García Rodriguez; A Jones; D Pinkel; J W Gray; D Sudar; S J Lockett
Journal:  J Microsc       Date:  1999-03       Impact factor: 1.758

9.  Active contour-based cell segmentation during freezing and its application in cryopreservation.

Authors:  Pengxiang Wu; Jingru Yi; Gang Zhao; Zhangjin Huang; Bensheng Qiu; Dayong Gao
Journal:  IEEE Trans Biomed Eng       Date:  2014-08-21       Impact factor: 4.538

10.  Automated tracking of gene expression in individual cells and cell compartments.

Authors:  Hailin Shen; Glyn Nelson; David E Nelson; Stephnie Kennedy; David G Spiller; Tony Griffiths; Norman Paton; Stephen G Oliver; Michael R H White; Douglas B Kell
Journal:  J R Soc Interface       Date:  2006-12-22       Impact factor: 4.118

View more
  70 in total

1.  Automated gleason grading on prostate biopsy slides by statistical representations of homology profile.

Authors:  Chaoyang Yan; Kazuaki Nakane; Xiangxue Wang; Yao Fu; Haoda Lu; Xiangshan Fan; Michael D Feldman; Anant Madabhushi; Jun Xu
Journal:  Comput Methods Programs Biomed       Date:  2020-05-26       Impact factor: 5.428

2.  Open access image repositories: high-quality data to enable machine learning research.

Authors:  F Prior; J Almeida; P Kathiravelu; T Kurc; K Smith; T J Fitzgerald; J Saltz
Journal:  Clin Radiol       Date:  2019-04-28       Impact factor: 2.350

3.  Deep fusion of contextual and object-based representations for delineation of multiple nuclear phenotypes.

Authors:  Mina Khoshdeli; Garrett Winkelmaier; Bahram Parvin
Journal:  Bioinformatics       Date:  2019-11-01       Impact factor: 6.937

4.  AIIMDs: An Integrated Framework of Automatic Idiopathic Inflammatory Myopathy Diagnosis for Muscle.

Authors:  Manish Sapkota; Fujun Liu; Yuanpu Xie; Hai Su; Fuyong Xing; Lin Yang
Journal:  IEEE J Biomed Health Inform       Date:  2017-04-13       Impact factor: 5.772

5.  Interactive thyroid whole slide image diagnostic system using deep representation.

Authors:  Pingjun Chen; Xiaoshuang Shi; Yun Liang; Yuan Li; Lin Yang; Paul D Gader
Journal:  Comput Methods Programs Biomed       Date:  2020-06-27       Impact factor: 5.428

6.  Split and Merge Watershed: a two-step method for cell segmentation in fluorescence microscopy images.

Authors:  Margarita Gamarra; Eduardo Zurek; Hugo Jair Escalante; Leidy Hurtado; Homero San-Juan-Vergara
Journal:  Biomed Signal Process Control       Date:  2019-06-04       Impact factor: 3.880

7.  Identification of Retinal Ganglion Cells from β-III Stained Fluorescent Microscopic Images.

Authors:  He Gai; Yi Wang; Leanne L H Chan; Bernard Chiu
Journal:  J Digit Imaging       Date:  2020-10       Impact factor: 4.056

8.  Sphere estimation network: three-dimensional nuclei detection of fluorescence microscopy images.

Authors:  David Joon Ho; Daniel Mas Montserrat; Chichen Fu; Paul Salama; Kenneth W Dunn; Edward J Delp
Journal:  J Med Imaging (Bellingham)       Date:  2020-08-27

9.  Analysis of Cellular Feature Differences of Astrocytomas with Distinct Mutational Profiles Using Digitized Histopathology Images.

Authors:  Mousumi Roy; Fusheng Wang; George Teodoro; Jose Velazqeuz Vega; Daniel Brat; Jun Kong
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2018-07

10.  Feature-Based Representation Improves Color Decomposition and Nuclear Detection Using a Convolutional Neural Network.

Authors:  Mina Khoshdeli; Bahram Parvin
Journal:  IEEE Trans Biomed Eng       Date:  2018-03       Impact factor: 4.538

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.