Literature DB >> 21444770

Local kinetics of morphogen gradients.

Peter V Gordon1, Christine Sample, Alexander M Berezhkovskii, Cyrill B Muratov, Stanislav Y Shvartsman.   

Abstract

Some aspects of pattern formation in developing embryos can be described by nonlinear reaction-diffusion equations. An important class of these models accounts for diffusion and degradation of a locally produced single chemical species. At long times, solutions of such models approach a steady state in which the concentration decays with distance from the source of production. We present analytical results that characterize the dynamics of this process and are in quantitative agreement with numerical solutions of the underlying nonlinear equations. The derived results provide an explicit connection between the parameters of the problem and the time needed to reach a steady state value at a given position. Our approach can be used for the quantitative analysis of tissue patterning by morphogen gradients, a subject of active research in biophysics and developmental biology.

Mesh:

Year:  2011        PMID: 21444770      PMCID: PMC3076853          DOI: 10.1073/pnas.1019245108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Do morphogen gradients arise by diffusion?

Authors:  Arthur D Lander; Qing Nie; Frederic Y M Wan
Journal:  Dev Cell       Date:  2002-06       Impact factor: 12.270

2.  How long does it take to establish a morphogen gradient?

Authors:  Alexander M Berezhkovskii; Christine Sample; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

3.  When it pays to rush: interpreting morphogen gradients prior to steady-state.

Authors:  Timothy Saunders; Martin Howard
Journal:  Phys Biol       Date:  2009-11-26       Impact factor: 2.583

Review 4.  Temporal dynamics of patterning by morphogen gradients.

Authors:  Eva Kutejova; James Briscoe; Anna Kicheva
Journal:  Curr Opin Genet Dev       Date:  2009-07-10       Impact factor: 5.578

5.  Two-dimensional morphogen gradient in Xenopus: boundary formation and real-time transduction response.

Authors:  T Kinoshita; J Jullien; J B Gurdon
Journal:  Dev Dyn       Date:  2006-12       Impact factor: 3.780

6.  Dual roles for patched in sequestering and transducing Hedgehog.

Authors:  Y Chen; G Struhl
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7.  Robustness of the BMP morphogen gradient in Drosophila embryonic patterning.

Authors:  Avigdor Eldar; Ruslan Dorfman; Daniel Weiss; Hilary Ashe; Ben-Zion Shilo; Naama Barkai
Journal:  Nature       Date:  2002-09-19       Impact factor: 49.962

8.  Rab5-mediated endocytosis of activin is not required for gene activation or long-range signalling in Xenopus.

Authors:  Anja I Hagemann; Xin Xu; Oliver Nentwich; Marko Hyvonen; James C Smith
Journal:  Development       Date:  2009-07-15       Impact factor: 6.868

Review 9.  The interpretation of morphogen gradients.

Authors:  Hilary L Ashe; James Briscoe
Journal:  Development       Date:  2006-02       Impact factor: 6.868

Review 10.  Making a grade: Sonic Hedgehog signalling and the control of neural cell fate.

Authors:  James Briscoe
Journal:  EMBO J       Date:  2009-02-05       Impact factor: 11.598

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  9 in total

1.  Physical interpretation of mean local accumulation time of morphogen gradient formation.

Authors:  Alexander M Berezhkovskii; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2011-10-21       Impact factor: 3.488

2.  Kinetics of receptor occupancy during morphogen gradient formation.

Authors:  Alexander M Berezhkovskii; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2013-06-28       Impact factor: 3.488

3.  Formation of morphogen gradients: local accumulation time.

Authors:  Alexander M Berezhkovskii; Christine Sample; Stanislav Y Shvartsman
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-05-06

4.  pH wave-front propagation in the urea-urease reaction.

Authors:  Magdalena M Wrobel; Tamás Bánsági; Stephen K Scott; Annette F Taylor; Chris O Bounds; Arturo Carranza; John A Pojman
Journal:  Biophys J       Date:  2012-08-08       Impact factor: 4.033

5.  Quantifying Temperature Compensation of Bicoid Gradients with a Fast T-Tunable Microfluidic Device.

Authors:  Hongcun Zhu; Yeping Cui; Chunxiong Luo; Feng Liu
Journal:  Biophys J       Date:  2020-08-12       Impact factor: 4.033

6.  Stationary Ca2+ nanodomains in the presence of buffers with two binding sites.

Authors:  Yinbo Chen; Victor Matveev
Journal:  Biophys J       Date:  2021-03-23       Impact factor: 4.033

7.  Listeria monocytogenes cell-to-cell spread in epithelia is heterogeneous and dominated by rare pioneer bacteria.

Authors:  Fabian E Ortega; Elena F Koslover; Julie A Theriot
Journal:  Elife       Date:  2019-02-05       Impact factor: 8.140

8.  Modeling protein dynamics in Caenorhabditis elegans embryos reveals that the PLK-1 gradient relies on weakly coupled reaction-diffusion mechanisms.

Authors:  Sofia Barbieri; Aparna Nurni Ravi; Erik E Griffin; Monica Gotta
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-08       Impact factor: 12.779

9.  Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction.

Authors:  Wolfgang Giese; Gregor Milicic; Andreas Schröder; Edda Klipp
Journal:  PLoS Comput Biol       Date:  2018-04-09       Impact factor: 4.475

  9 in total

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