Literature DB >> 21373960

Lessons on O2 and NO bonding to heme from ab initio multireference/multiconfiguration and DFT calculations.

Sason Shaik1, Hui Chen.   

Abstract

This commentary focuses on the conceptual interpretation of the bonding of O(2) and NO to heme in oxyheme and nitrosylheme complexes, using high-level ab initio complete active space self-consistent field (CASSCF)/molecular mechanical (MM), gas-phase CASSCF, and CASSCF followed by second-order perturbation theory (CASPT2) calculations as well as density functional theory (DFT) calculations. The commentary shows that expanding the complex multiconfigurational (MC) wave functions into valence bond (VB)-type configurations based on localized orbitals provides significant insight into bonding and precise definitions of oxidation states. Furthermore, the VB "reading" of the wave function unifies the descriptions of DFT and MC theories, reconciling controversies and surprises. In so doing, we demonstrate the impact of the protein bulk polarity and its hydrogen-bonding capability on the bonding. The insight provided by "reading" the VB content of the MC wave functions highlights the potential of this approach as a general paradigm in future computational bioinorganic chemistry. A great deal of insight lies in this road.

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Year:  2011        PMID: 21373960     DOI: 10.1007/s00775-011-0763-1

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  68 in total

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Authors:  J J WEISS
Journal:  Nature       Date:  1964-07-11       Impact factor: 49.962

2.  NATURE OF THE IRON-OXYGEN BOND IN OXYHAEMOGLOBIN.

Authors:  J J WEISS
Journal:  Nature       Date:  1964-04-04       Impact factor: 49.962

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Authors:  Sason Shaik; Hui Chen; Deepa Janardanan
Journal:  Nat Chem       Date:  2010-12-15       Impact factor: 24.427

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Review 5.  P450 enzymes: their structure, reactivity, and selectivity-modeled by QM/MM calculations.

Authors:  Sason Shaik; Shimrit Cohen; Yong Wang; Hui Chen; Devesh Kumar; Walter Thiel
Journal:  Chem Rev       Date:  2010-02-10       Impact factor: 60.622

6.  Density functional theory for transition metals and transition metal chemistry.

Authors:  Christopher J Cramer; Donald G Truhlar
Journal:  Phys Chem Chem Phys       Date:  2009-10-21       Impact factor: 3.676

7.  Spin-dependent mechanism for diatomic ligand binding to heme.

Authors:  Stefan Franzen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

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Journal:  Nature       Date:  1981-07-02       Impact factor: 49.962

9.  S K-edge X-ray absorption spectroscopy and density functional theory studies of high and low spin {FeNO}7 thiolate complexes: exchange stabilization of electron delocalization in {FeNO}7 and {FeO2}8.

Authors:  Ning Sun; Lei V Liu; Abhishek Dey; Gloria Villar-Acevedo; Julie A Kovacs; Marcetta Y Darensbourg; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  Inorg Chem       Date:  2010-12-15       Impact factor: 5.165

10.  Not innocent: verdict from ab initio multiconfigurational second-order perturbation theory on the electronic structure of chloroiron corrole.

Authors:  Björn O Roos; Valera Veryazov; Jeanet Conradie; Peter R Taylor; Abhik Ghosh
Journal:  J Phys Chem B       Date:  2008-10-24       Impact factor: 2.991

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  9 in total

1.  X-ray absorption spectroscopic investigation of the electronic structure differences in solution and crystalline oxyhemoglobin.

Authors:  Samuel A Wilson; Evan Green; Irimpan I Mathews; Maurizio Benfatto; Keith O Hodgson; Britt Hedman; Ritimukta Sarangi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-23       Impact factor: 11.205

2.  Effective intermediate-spin iron in O2-transporting heme proteins.

Authors:  Nils Schuth; Stefan Mebs; Dennis Huwald; Pierre Wrzolek; Matthias Schwalbe; Anja Hemschemeier; Michael Haumann
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

3.  Quantum chemical DFT study of the interaction between molecular oxygen and FeN₄ complexes, and effect of the macrocyclic ligand.

Authors:  Adilson Luís Pereira Silva; Luciano Farias de Almeida; Aldaléa Lopes Brandes Marques; Hawbertt Rocha Costa; Auro Atsushi Tanaka; Albérico Borges Ferreira da Silva; Jaldyr de Jesus Gomes Varela
Journal:  J Mol Model       Date:  2014-02-25       Impact factor: 1.810

Review 4.  Ambidentate H-bonding of NO and O2 in heme proteins.

Authors:  Thomas G Spiro; Alexandra V Soldatova
Journal:  J Inorg Biochem       Date:  2012-06-01       Impact factor: 4.155

5.  The McClure and Weiss models of Fe-O2 bonding for oxyhemes, and the HbO2 + NO reaction.

Authors:  Richard D Harcourt
Journal:  J Biol Inorg Chem       Date:  2013-12-07       Impact factor: 3.358

6.  Electronic structure and ligand vibrations in FeNO, CoNO, and FeOO porphyrin adducts.

Authors:  Alexandra V Soldatova; Mohammed Ibrahim; Thomas G Spiro
Journal:  Inorg Chem       Date:  2013-06-13       Impact factor: 5.165

7.  Alternative modes of O2 activation in P450 and NOS enzymes are clarified by DFT modeling and resonance Raman spectroscopy.

Authors:  Alexandra V Soldatova; Thomas G Spiro
Journal:  J Inorg Biochem       Date:  2020-03-13       Impact factor: 4.155

8.  Mechanistic insights into dioxygen activation by a manganese corrole complex: a broken-symmetry DFT study.

Authors:  Jiangfeng Yu; Wenzhen Lai
Journal:  RSC Adv       Date:  2021-07-16       Impact factor: 4.036

9.  Mapping blood biochemistry by Raman spectroscopy at the cellular level.

Authors:  Victor V Volkov; Jonathan McMaster; Joanna Aizenberg; Carole C Perry
Journal:  Chem Sci       Date:  2021-12-01       Impact factor: 9.825

  9 in total

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