Literature DB >> 23763617

Electronic structure and ligand vibrations in FeNO, CoNO, and FeOO porphyrin adducts.

Alexandra V Soldatova1, Mohammed Ibrahim, Thomas G Spiro.   

Abstract

The gaseous ligands, CO, NO, and O2 interact with the Fe ion in heme proteins largely via backbonding of Fe electrons to the π* orbitals of the XO (X = C, N, O) ligands. In these FeXO adducts, the Fe-X stretching frequency varies inversely with the X-O stretching frequency, since increased backbonding strengthens the Fe-X bond while weakening the X-O bond. Inverse frequency correlations have been observed for all three ligands, despite differing electronic and geometric structures, and despite variable composition of the "FeX" vibrational mode, in which Fe-X stretching and Fe-X-O coordinates are mixed for bent FeXO adducts. We report experimental data for 5-coordinate Co(II)(NO) porphyrin adducts (isoelectronic with Fe(II)(OO) adducts), and the results of density functional theory (DFT) modeling for 5-coordinate Fe(II)(NO), Co(II)(NO), and Fe(II)(OO) adducts. Inverse ν(MX)/ν(XO) correlations are obtained computationally, using model porphyrins with graded electron-donating and -withdrawing substituents to modulate the backbonding. Computed slopes agree satisfactorily with experiment, provided nonhybrid functionals are used, which avoid overemphasizing high-spin states. The BP86 functional gives correct ground states, a closed-shell singlet for Co(II)(NO) and an open-shell singlet for the isoelectronic Fe(II)(OO), as corroborated by structural data for Co(II)(NO), and the ν(MX)/ν(XO) slope agreement with experiment for both adducts. However, for Fe(II)(OO) adducts, the computed inverse ν(MX)/ν(XO) correlation applies only to porphyrins with electron-donating and withdrawing substituents of moderate strength. For substituents more donating than -CH3, a direct correlation is obtained, the Fe-O and O-O bonds weakening in concert. This effect is ascribed to the dominance of σ bonding via the in-plane dxz(+dz(2))-π* orbital, when electron-donating substituents raise the d orbital energies sufficiently to render backbonding (dyz-π*) unimportant.

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Year:  2013        PMID: 23763617      PMCID: PMC3766410          DOI: 10.1021/ic400364x

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  36 in total

Review 1.  Heme-based sensors in biological systems.

Authors:  K R Rodgers
Journal:  Curr Opin Chem Biol       Date:  1999-04       Impact factor: 8.822

2.  Electronic ground states and vibrational frequency shifts of diatomic ligands in heme adducts.

Authors:  Yang Liu; Huai Sun
Journal:  J Comput Chem       Date:  2010-12-15       Impact factor: 3.376

Review 3.  Nitric oxide interaction with insect nitrophorins and thoughts on the electron configuration of the {FeNO}6 complex.

Authors:  F Ann Walker
Journal:  J Inorg Biochem       Date:  2005-01       Impact factor: 4.155

Review 4.  Ambidentate H-bonding of NO and O2 in heme proteins.

Authors:  Thomas G Spiro; Alexandra V Soldatova
Journal:  J Inorg Biochem       Date:  2012-06-01       Impact factor: 4.155

5.  Fe-N-O structure and bonding in six-coordinate {FeNO}6 porphyrinates containing imidazole: implications for reactivity of coordinated NO.

Authors:  Douglas P Linder; Kenton R Rodgers
Journal:  Inorg Chem       Date:  2005-03-07       Impact factor: 5.165

6.  Resonance raman investigation of the specific sensing mechanism of a target molecule by gas sensory proteins.

Authors:  Takehiro Ohta; Teizo Kitagawa
Journal:  Inorg Chem       Date:  2005-02-21       Impact factor: 5.165

7.  Role of the distal hydrogen-bonding network in regulating oxygen affinity in the truncated hemoglobin III from Campylobacter jejuni.

Authors:  Pau Arroyo Mañez; Changyuan Lu; Leonardo Boechi; Marcelo A Martí; Mark Shepherd; Jayne Louise Wilson; Robert K Poole; F Javier Luque; Syun-Ru Yeh; Darío A Estrin
Journal:  Biochemistry       Date:  2011-04-25       Impact factor: 3.162

8.  Iron porphyrins with different imidazole ligands. A theoretical comparative study.

Authors:  Meng-Sheng Liao; Ming-Ju Huang; John D Watts
Journal:  J Phys Chem A       Date:  2010-09-09       Impact factor: 2.781

9.  DFT analysis of axial and equatorial effects on heme-CO vibrational modes: applications to CooA and H-NOX heme sensor proteins.

Authors:  Changliang Xu; Mohammed Ibrahim; Thomas G Spiro
Journal:  Biochemistry       Date:  2008-01-25       Impact factor: 3.162

10.  Structural and functional properties of a truncated hemoglobin from a food-borne pathogen Campylobacter jejuni.

Authors:  Changyuan Lu; Tsuyoshi Egawa; Laura M Wainwright; Robert K Poole; Syun-Ru Yeh
Journal:  J Biol Chem       Date:  2007-03-05       Impact factor: 5.157

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  1 in total

1.  Alternative modes of O2 activation in P450 and NOS enzymes are clarified by DFT modeling and resonance Raman spectroscopy.

Authors:  Alexandra V Soldatova; Thomas G Spiro
Journal:  J Inorg Biochem       Date:  2020-03-13       Impact factor: 4.155

  1 in total

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