Literature DB >> 21361176

Technical note: DIRART--A software suite for deformable image registration and adaptive radiotherapy research.

Deshan Yang1, Scott Brame, Issam El Naqa, Apte Aditya, Yu Wu, S Murty Goddu, Sasa Mutic, Joseph O Deasy, Daniel A Low.   

Abstract

PURPOSE: Recent years have witnessed tremendous progress in image guide radiotherapy technology and a growing interest in the possibilities for adapting treatment planning and delivery over the course of treatment. One obstacle faced by the research community has been the lack of a comprehensive open-source software toolkit dedicated for adaptive radiotherapy (ART). To address this need, the authors have developed a software suite called the Deformable Image Registration and Adaptive Radiotherapy Toolkit (DIRART).
METHODS: DIRART is an open-source toolkit developed in MATLAB. It is designed in an object-oriented style with focus on user-friendliness, features, and flexibility. It contains four classes of DIR algorithms, including the newer inverse consistency algorithms to provide consistent displacement vector field in both directions. It also contains common ART functions, an integrated graphical user interface, a variety of visualization and image-processing features, dose metric analysis functions, and interface routines. These interface routines make DIRART a powerful complement to the Computational Environment for Radiotherapy Research (CERR) and popular image-processing toolkits such as ITK.
RESULTS: DIRART provides a set of image processing/registration algorithms and postprocessing functions to facilitate the development and testing of DIR algorithms. It also offers a good amount of options for DIR results visualization, evaluation, and validation.
CONCLUSIONS: By exchanging data with treatment planning systems via DICOM-RT files and CERR, and by bringing image registration algorithms closer to radiotherapy applications, DIRART is potentially a convenient and flexible platform that may facilitate ART and DIR research. 0 2011 Ameri-

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Mesh:

Year:  2011        PMID: 21361176      PMCID: PMC3017581          DOI: 10.1118/1.3521468

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  32 in total

Review 1.  A survey of medical image registration.

Authors:  J B Maintz; M A Viergever
Journal:  Med Image Anal       Date:  1998-03       Impact factor: 8.545

2.  Image registration via level-set motion: applications to atlas-based segmentation.

Authors:  B C Vemuri; J Ye; Y Chen; C M Leonard
Journal:  Med Image Anal       Date:  2003-03       Impact factor: 8.545

3.  Molecular (functional) imaging for radiotherapy applications: an RTOG symposium.

Authors:  J D Chapman; Jeffrey D Bradley; Janet F Eary; Roland Haubner; S M Larson; Jeff Michael Michalski; Paul G Okunieff; H W Strauss; Y C Ung; Michael J Welch
Journal:  Int J Radiat Oncol Biol Phys       Date:  2003-02-01       Impact factor: 7.038

4.  Re-optimization in adaptive radiotherapy.

Authors:  Chuan Wu; Robert Jeraj; Gustavo H Olivera; Thomas R Mackie
Journal:  Phys Med Biol       Date:  2002-09-07       Impact factor: 3.609

5.  Flat-panel cone-beam computed tomography for image-guided radiation therapy.

Authors:  David A Jaffray; Jeffrey H Siewerdsen; John W Wong; Alvaro A Martinez
Journal:  Int J Radiat Oncol Biol Phys       Date:  2002-08-01       Impact factor: 7.038

Review 6.  Image guidance for precise conformal radiotherapy.

Authors:  Thomas Rockwell Mackie; Jeff Kapatoes; Ken Ruchala; Weiguo Lu; Chuan Wu; Gustavo Olivera; Lisa Forrest; Wolfgang Tome; Jim Welsh; Robert Jeraj; Paul Harari; Paul Reckwerdt; Bhudatt Paliwal; Mark Ritter; Harry Keller; Jack Fowler; Minesh Mehta
Journal:  Int J Radiat Oncol Biol Phys       Date:  2003-05-01       Impact factor: 7.038

7.  Deformable registration of abdominal kilovoltage treatment planning CT and tomotherapy daily megavoltage CT for treatment adaptation.

Authors:  Deshan Yang; Summer R Chaudhari; S Murty Goddu; David Pratt; Divya Khullar; Joseph O Deasy; Issam El Naqa
Journal:  Med Phys       Date:  2009-02       Impact factor: 4.071

8.  Technical note: deformable image registration on partially matched images for radiotherapy applications.

Authors:  Deshan Yang; S Murty Goddu; Wei Lu; Olga L Pechenaya; Yu Wu; Joseph O Deasy; Issam El Naqa; Daniel A Low
Journal:  Med Phys       Date:  2010-01       Impact factor: 4.071

9.  A fast inverse consistent deformable image registration method based on symmetric optical flow computation.

Authors:  Deshan Yang; Hua Li; Daniel A Low; Joseph O Deasy; Issam El Naqa
Journal:  Phys Med Biol       Date:  2008-10-14       Impact factor: 3.609

10.  An automated method for adaptive radiation therapy for prostate cancer patients using continuous fiducial-based tracking.

Authors:  C E Noel; L Santanam; J R Olsen; K W Baker; P J Parikh
Journal:  Phys Med Biol       Date:  2010-01-07       Impact factor: 3.609

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  19 in total

1.  Spatiotemporal stability of Cu-ATSM and FLT positron emission tomography distributions during radiation therapy.

Authors:  Tyler J Bradshaw; Stephen Yip; Ngoneh Jallow; Lisa J Forrest; Robert Jeraj
Journal:  Int J Radiat Oncol Biol Phys       Date:  2014-03-28       Impact factor: 7.038

2.  Automatic large quantity landmark pairs detection in 4DCT lung images.

Authors:  Yabo Fu; Xue Wu; Allan M Thomas; Harold H Li; Deshan Yang
Journal:  Med Phys       Date:  2019-08-07       Impact factor: 4.071

3.  An atlas-based method to predict three-dimensional dose distributions for cancer patients who receive radiotherapy.

Authors:  S A Yoganathan; Rui Zhang
Journal:  Phys Med Biol       Date:  2019-04-12       Impact factor: 3.609

4.  4D-CT Lung registration using anatomy-based multi-level multi-resolution optical flow analysis and thin-plate splines.

Authors:  Yugang Min; John Neylon; Amish Shah; Sanford Meeks; Percy Lee; Patrick Kupelian; Anand P Santhanam
Journal:  Int J Comput Assist Radiol Surg       Date:  2014-01-14       Impact factor: 2.924

5.  LungRegNet: An unsupervised deformable image registration method for 4D-CT lung.

Authors:  Yabo Fu; Yang Lei; Tonghe Wang; Kristin Higgins; Jeffrey D Bradley; Walter J Curran; Tian Liu; Xiaofeng Yang
Journal:  Med Phys       Date:  2020-02-26       Impact factor: 4.071

6.  Technical Note: scuda: A software platform for cumulative dose assessment.

Authors:  Seyoun Park; Todd McNutt; William Plishker; Harry Quon; John Wong; Raj Shekhar; Junghoon Lee
Journal:  Med Phys       Date:  2016-10       Impact factor: 4.071

7.  Artificial Intelligence in Radiation Therapy.

Authors:  Yabo Fu; Hao Zhang; Eric D Morris; Carri K Glide-Hurst; Suraj Pai; Alberto Traverso; Leonard Wee; Ibrahim Hadzic; Per-Ivar Lønne; Chenyang Shen; Tian Liu; Xiaofeng Yang
Journal:  IEEE Trans Radiat Plasma Med Sci       Date:  2021-08-24

8.  Evaluation of various deformable image registration algorithms for thoracic images.

Authors:  Noriyuki Kadoya; Yukio Fujita; Yoshiyuki Katsuta; Suguru Dobashi; Ken Takeda; Kazuma Kishi; Masaki Kubozono; Rei Umezawa; Toshiyuki Sugawara; Haruo Matsushita; Keiichi Jingu
Journal:  J Radiat Res       Date:  2013-07-17       Impact factor: 2.724

9.  Registering prostate external beam radiotherapy with a boost from high-dose-rate brachytherapy: a comparative evaluation of deformable registration algorithms.

Authors:  Calyn R Moulton; Michael J House; Victoria Lye; Colin I Tang; Michele Krawiec; David J Joseph; James W Denham; Martin A Ebert
Journal:  Radiat Oncol       Date:  2015-12-14       Impact factor: 3.481

10.  Evaluation of dosimetric misrepresentations from 3D conventional planning of liver SBRT using 4D deformable dose integration.

Authors:  Unjin A Yeo; Michael L Taylor; Jeremy R Supple; Shankar Siva; Tomas Kron; Daniel Pham; Rick D Franich
Journal:  J Appl Clin Med Phys       Date:  2014-11-08       Impact factor: 2.102

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