Literature DB >> 21318354

Revisiting the DNA C-values of the genome size-standards used in plant flow cytometry to choose the "best primary standards".

Milene Miranda Praça-Fontes1, Carlos Roberto Carvalho, Wellington Ronildo Clarindo, Cosme Damião Cruz.   

Abstract

Flow cytometry (FCM) techniques have enabled characterization of the genome size for various plant species. In order to measure the nuclear genome size of a species, reference standards with well-established DNA content are necessary. However, different 2C-values have been described for the same species used as reference standard. This fact has brought about inaccurate genome measurements, making relevant the establishment of optimal DNA reference standards for plant cytometric analyses. Our work revisited the genome size of Arabidopsis thaliana and other seven plant standards, which were denominated "Doležel's standard set" and have been widely used in plant DNA measurements. These eight plant standards were reassessed for a comparative measurement of their DNA content values, using each plant species as primary standard in a cascade-like manner, from A. thaliana to Allium cepa. The genome size values obtained here were compared to those reported in the literature by statistical analyses. As a result, Raphanus sativus and Drosophila melanogaster were considered the most inadequate primary standards, whereas A. thaliana, Solanum lycopersicum and Pisum sativum were found to be the most suitable.

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Year:  2011        PMID: 21318354     DOI: 10.1007/s00299-011-1026-x

Source DB:  PubMed          Journal:  Plant Cell Rep        ISSN: 0721-7714            Impact factor:   4.570


  23 in total

Review 1.  Nuclear genome size: are we getting closer?

Authors:  Jaroslav Dolezel; Johann Greilhuber
Journal:  Cytometry A       Date:  2010-07       Impact factor: 4.355

Review 2.  Plant DNA flow cytometry and estimation of nuclear genome size.

Authors:  Jaroslav Dolezel; Jan Bartos
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

3.  Circumpolar phylogeography of Juncus biglumis (Juncaceae) inferred from AFLP fingerprints, cpDNA sequences, nuclear DNA content and chromosome numbers.

Authors:  Peter Schönswetter; Jan Suda; Magnus Popp; Hanna Weiss-Schneeweiss; Christian Brochmann
Journal:  Mol Phylogenet Evol       Date:  2006-07-06       Impact factor: 4.286

4.  DAPI staining of fixed cells for high-resolution flow cytometry of nuclear DNA.

Authors:  F Otto
Journal:  Methods Cell Biol       Date:  1990       Impact factor: 1.441

5.  Flow cytometric analysis using SYBR Green I for genome size estimation in coffee.

Authors:  Wellington Ronildo Clarindo; Carlos Roberto Carvalho
Journal:  Acta Histochem       Date:  2010-02-10       Impact factor: 2.479

6.  The DNA content of sperm of Drosophila melanogaster.

Authors:  E M Rasch; H J Barr; R W Rasch
Journal:  Chromosoma       Date:  1971       Impact factor: 4.316

7.  Comparison of four nuclear isolation buffers for plant DNA flow cytometry.

Authors:  João Loureiro; Eleazar Rodriguez; Jaroslav Dolezel; Conceição Santos
Journal:  Ann Bot       Date:  2006-07-04       Impact factor: 4.357

8.  Investigation on the causes of stoichiometric error in genome size estimation using heat experiments: consequences on data interpretation.

Authors:  Michel Noirot; Philippe Barre; Christophe Duperray; Serge Hamon; Alexandre DE Kochko
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

9.  Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate of approximately 125 Mb.

Authors:  Michael D Bennett; Ilia J Leitch; H James Price; J Spencer Johnston
Journal:  Ann Bot       Date:  2003-04       Impact factor: 4.357

10.  Anthocyanin inhibits propidium iodide DNA fluorescence in Euphorbia pulcherrima: implications for genome size variation and flow cytometry.

Authors:  Michael D Bennett; H James Price; J Spencer Johnston
Journal:  Ann Bot       Date:  2007-12-23       Impact factor: 4.357

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  17 in total

1.  C-value reassessment of plant standards: an image cytometry approach.

Authors:  Milene Miranda Praça-Fontes; Carlos Roberto Carvalho; Wellington Ronildo Clarindo
Journal:  Plant Cell Rep       Date:  2011-08-18       Impact factor: 4.570

Review 2.  Coffea cytogenetics: from the first karyotypes to the meeting with genomics.

Authors:  Mariana Cansian Sattler; Stéfanie Cristina de Oliveira; Maria Andréia Corrêa Mendonça; Wellington Ronildo Clarindo
Journal:  Planta       Date:  2022-05-02       Impact factor: 4.116

3.  Genetic diversity and karyotype of Pitcairnia azouryi: an endangered species of Bromeliaceae endemic to Atlantic Forest inselbergs.

Authors:  Vitor da Cunha Manhães; Fábio Demolinari de Miranda; Wellington Ronildo Clarindo; Tatiana Tavares Carrijo
Journal:  Mol Biol Rep       Date:  2019-10-05       Impact factor: 2.316

4.  Induction and flow cytometry identification of tetraploids from seed-derived explants through colchicine treatments in Catharanthus roseus (L.) G. Don.

Authors:  Shi-Hai Xing; Xin-Bo Guo; Quan Wang; Qi-Fang Pan; Yue-Sheng Tian; Pin Liu; Jing-Ya Zhao; Guo-Feng Wang; Xiao-Fen Sun; Ke-Xuan Tang
Journal:  J Biomed Biotechnol       Date:  2011-05-29

5.  Genome size in Anthurium evaluated in the context of karyotypes and phenotypes.

Authors:  Barbara J Bliss; Jon Y Suzuki
Journal:  AoB Plants       Date:  2012-04-16       Impact factor: 3.276

6.  Updating the maize karyotype by chromosome DNA sizing.

Authors:  Jéssica Coutinho Silva; Carlos Roberto Carvalho; Wellington Ronildo Clarindo
Journal:  PLoS One       Date:  2018-01-02       Impact factor: 3.240

7.  Karyotype characterization and comparison of three hexaploid species of Bromus Linnaeus, 1753 (Poaceae).

Authors:  Leonardo Luís Artico; Ana Cristina Mazzocato; Juliano Lino Ferreira; Carlos Roberto Carvalho; Wellington Ronildo Clarindo
Journal:  Comp Cytogenet       Date:  2017-04-07       Impact factor: 1.800

8.  First karyotype description and nuclear 2C value for Myrsine (Primulaceae): comparing three species.

Authors:  Renata Flávia de Carvalho; Paulo Marcos Amaral-Silva; Micheli Sossai Spadeto; Andrei Caíque Pires Nunes; Tatiana Tavares Carrijo; Carlos Roberto Carvalho; Wellington Ronildo Clarindo
Journal:  Comp Cytogenet       Date:  2017-03-13       Impact factor: 1.800

9.  The contribution of cytogenetics and flow cytometry for understanding the karyotype evolution in three Dorstenia (Linnaeus, 1753) species (Moraceae).

Authors:  Paulo Marcos Amaral-Silva; Wellington Ronildo Clarindo; Tatiana Tavares Carrijo; Carlos Roberto Carvalho; Milene Miranda Praça-Fontes
Journal:  Comp Cytogenet       Date:  2016-01-22       Impact factor: 1.800

10.  Intraspecific variations in cardamom (Elettaria cardamomum Maton): assessment of genomic diversity by flow cytometry, cytological studies and ISSR analysis.

Authors:  N Anjali; K M Ganga; F Nadiya; S Shefeek; K K Sabu
Journal:  Springerplus       Date:  2016-09-13
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