Renata Flávia de Carvalho1, Paulo Marcos Amaral-Silva1, Micheli Sossai Spadeto1, Andrei Caíque Pires Nunes2, Tatiana Tavares Carrijo3, Carlos Roberto Carvalho4, Wellington Ronildo Clarindo1. 1. Laboratório de Citogenética, Departamento de Biologia, Centro de Ciências Agrárias, Universidade Federal do Espírito Santo, 29.500-000 Alegre (ES), Brazil. 2. Laboratório de Biometria, Departamento de Biologia Geral, Universidade Federal de Viçosa, 36.570-000 Viçosa (MG), Brazil. 3. Laboratório de Botânica, Departamento de Biologia, Centro de Ciências Agrárias, Universidade Federal do Espírito Santo, 29.500-000 Alegre (ES), Brazil. 4. Laboratório de Citogenética e Citometria, Departamento de Biologia Geral, Centro de Ciências Biológicas e da Saúde, Universidade Federal de Viçosa, 36.570-000 Viçosa (MG), Brazil.
Abstract
Cytogenetic studies in Primulaceae are mostly available for herbaceous species, and are focused on the chromosome number determination. An accurate karyotype characterization represents a starting point to know the morphometry and class of the chromosomes. Comparison among species within Myrsine, associating these data with the nuclear 2C value, can show changes that led the karyotype evolution. Here, we studied three Myrsine species [Myrsine coriacea (Swartz, 1788) Brown ex Roemer et Schultes, 1819, Myrsine umbellata Martius, 1841 and Myrsine parvifolia Candolle, 1841] that show different abilities to occupy the varied types of vegetation within the Brazilian Atlantic Forest. Cytogenetic characterization showed some individuals with 2n = 45 chromosomes for Myrsine parvifolia and Myrsine coriacea, with most individuals of the three species having 2n = 46. The first karyograms for Myrsine were assembled and presented morphologically identical and distinct chromosome pairs. In addition, differences in the mean 2C nuclear value and chromosome morphometry were found. Therefore, the first description of the Myrsine karyotype has been presented, as well as the nuclear 2C value. The procedures can be applied to other Myrsine species for future investigations in order to better understand its effects on the differential spatial occupation abilities shown by the species in Brazilian Atlantic Forest.
Cytogenetic studies in Primulaceae are mostly available for herbaceous species, and are focused on the chromosome number determination. An accurate karyotype characterization represents a starting point to know the morphometry and class of the chromosomes. Comparison among species within Myrsine, associating these data with the nuclear 2C value, can show changes that led the karyotype evolution. Here, we studied three Myrsine species [Myrsine coriacea (Swartz, 1788) Brown ex Roemer et Schultes, 1819, Myrsine umbellata Martius, 1841 and Myrsine parvifolia Candolle, 1841] that show different abilities to occupy the varied types of vegetation within the Brazilian Atlantic Forest. Cytogenetic characterization showed some individuals with 2n = 45 chromosomes for Myrsine parvifolia and Myrsine coriacea, with most individuals of the three species having 2n = 46. The first karyograms for Myrsine were assembled and presented morphologically identical and distinct chromosome pairs. In addition, differences in the mean 2C nuclear value and chromosome morphometry were found. Therefore, the first description of the Myrsine karyotype has been presented, as well as the nuclear 2C value. The procedures can be applied to other Myrsine species for future investigations in order to better understand its effects on the differential spatial occupation abilities shown by the species in Brazilian Atlantic Forest.
Previous studies regarding the chromosome number in (s. APG 2016) are available for some genera, as:
Linnaeus, 1753 (Bennett and Grimshaw 1991, Ishizaka 2003),
Linnaeus, 1753 (Aguilera et al. 2011, Bennett and
Leitch 2012), Linnaeus, 1753 (Baltisberger and Kocyan 2010, Bennett and Leitch 2012,
Chalup and Seijo 2013),
Linnaeus, 1753 (Chepinoga et al. 2009),
Baylis, 1951 (Dawson 1995),
Linnaeus, 1753 (Vickery and Miller 2008),
Swartz, 1788 (Koyama and Kokubugata 1998),
Linnaeus, 1753 (Abou-El-Enain 2006, Casazza et al. 2012, Theodoridis et al.
2013), and Linnaeus, 1753 (Oberle et al. 2012), and
Linnaeus, 1753 (Beuzenberg and Hair 1983, Dawson 1995, 2000, Hanson et al. 2003, Rice et al.
2015). Except the genus
and , these taxa comprise annual and
biennial herbaceous species.The cosmopolitan Linnaeus is one of the main
genera of , considering species richness,
represented by tree and shrub species (Heenan and Lange
1998). Its members are generally dioecious plants, characterized by ramiflorus and
congested inflorescences, and flowers with oppositipetalous stamens. Despite
being one of the largest and
most important genera of , only eighteen species, among the 300
estimated from this genus, have been studied regarding cytogenetic aspects. Fifteen of these
species occur in the African, Asian and Oceania continents
( Cochayne, 1902,
Cunningham, 1839,
Cheeseman, 1887,
(Hooker f.) Hooker f., 1867,
(Hooker f.) Hooker f., 1864,
Heenan et de Lange, 1998,
Allan, 1961,
Mueller, 1864;
Linnaeus, 1753;
Candolle, 1841,
Léveille, 1914,
Wallich, 1824,
(A. Richard, 1832) Allan, 1947,
Wallich, 1824), and just
three occurs in America continent ( (Mez, 1902) Otegui, 1998;
(Aublet, 1775) Kuntze, 1891,
(Swartz, 1788) Brown ex Roemer
et Schultes, 1819. The chromosome number (2n = 46 or 2n = 48) was the only karyotype data
reported, without any images of the chromosomes. In addition, the evolutionary aspects that
culminated in the karyotype diversification within the genus are poorly understood.One interesting ecological aspect observed in Neotropical species of
that occur in Brazil is that
some of them occur in more than one biome, as Cerrado, Atlantic Forest, and Amazonian
Forest, while others are restricted of one of these biomes, as Atlantic Forest (BFG
2015). Among species that occur in Atlantic Forest, for example, some are able to occupy
different types of vegetation within this biome, including Restinga Vegetation, High
Altitude Campos, Rocky Outcrops, Ombrophyllous and PageBreakMixed Ombrophyllous
Forests, while others are able to occupy just one type of vegetation (Freitas and Kinoshita 2015). Considering the distinct ecological aspects,
cytogenetic studies are relevant to show other differences between these species.Studies combining cytogenetics and nuclear DNA content have offered data for understanding
evolutionary processes in different species (Clarindo and
Carvalho 2008, Kolář et al. 2013).
Measurement of the nuclear DNA content is complementary to cytogenetic information and is
useful for detecting genome size variations between related species (Marhold et al. 2010, Kolář et al.
2013). Fine adjustments in cytogenetic procedures, combining advances in microscopy
and image analysis systems, can provide accurate karyotype characterization for
species. Here, we study three
species of that occur in contrasting types
of vegetation of the Brazilian Atlantic Forest, aiming to determine the chromosome number,
describe the karyotype and measure the nuclear DNA.
Material and methods
Plant samples
Three species were selected for this study: 1. (Voucher – T.T. Carrijo 1458,
VIES herbarium), which is a widespread species in Atlantic Forest found in all types of
vegetation, including open areas within Ombrophyllous and Mixed Ombrophyllous Forests,
Rock Outcrops, High Altitude Campos, and Restinga Vegetation; 2.
(Voucher – T.T. Carrijo 1467,
VIES herbarium), which is found in mostly all types of vegetation of
, except High Altitude Campos;
and 3. (Voucher – T.T. Carrijo
2232, VIES herbarium), a species restricted to Restinga vegetation (BFG 2015).Fruits and leaves of all species were collected.
and
were sampled from October
2012 to July 2015 in a forest remnant located in Iúna municipality, Espírito Santo
(ES)
State, Brazil (), characterized
as Rocky Outcrops, at 600 () and 1,100 m.s.m
().
was collected in a forest
remnant located in Guarapari municipality, ES, Brazil
(),
characterized as coastal sandy plains vegetation (Restinga) at sea level. Leaves and
fruits of L. and
L. (internal standards for flow
cytometry – FCM, 2C = 2.00
pg and 2C = 9.16 pg, respectively, Praça-Fontes et al.
2011) were supplied by Dr. Jaroslav Doležel (Experimental Institute of Botany,
Czech Republic).
In vitro plantlet recovering
Fruit pericarp was manually removed and the seeds were desinfested according to Oliveira et al. (2013) and germinated in a medium
composed of MS salts (Sigma) PageBreakand vitamins (Murashige and Skoog 1962), 30 g L-1 sucrose (Sigma), 7 g
L-1 agar and 2.685 µM naphthaleneacetic acid (NAA, Sigma).
and
seeds were subjected to the
same disinfestation procedure and inoculated in medium without NAA. Germination was
done at 25 °C under a 16/8 hours (light/dark) regime.
Nuclear 2C value measurement
In order to adapt the FCM
for , the following procedures
were done: (a) initially, from leaves collected in the field of male and female
individuals (samples) and of the two standards; (b) afterward, replacing the
dithiothreitol antioxidant by polyethylene glycol (PEG) in nuclei isolation
buffer; and (c) from leaves of the samples and plantlets in vitro
cultivated.Nuclei suspensions were obtained by co-chopping (Galbraith et al. 1983) leaf fragments (1 cm2) cut from each sample
( species) and standard
( or
). The suspensions were
processed and stained following Otto (1990) and
Praça-Fontes et al. (2011) and analyzed with the
flow cytometer Partec PAS II/III (Partec GmbH).
genome size was measured by multiplying the 2C value of the internal standard using the
fluorescence intensity corresponding to G0/G1 nuclei peak. Mean 2C
values were compared by the F test at 5% probability.
Cytogenetic analysis
Roots were cut from the in vitro plantlets, treated with 5.0 μM amiprofos-methyl (APM) (Agrochem KK Nihon Bayer)
for 12, 15, 18 or 24 h at 4°C, rinsed in distilled water (dH2O) for 20 min and
fixed in methanol:acetic acid (3:1) for 24 h. The fixative solution was changed three
times and the material was stored at -20°C (Carvalho et
al. 2007). The roots were washed, macerated in 1:5 pectinase solution
(enzyme:dH2O) for 3 h at 34°C, or 1:20 enzymatic pool (4% cellulase – Kinki
Yakult MFG, 1% macerozyme – Kinki Yakult MFG, and 0.4% hemicellulase – Sigma) for 1 h 30
min or 1 h 45 min at 34°C, washed in dH2O, fixed, and stored at -20°C.Slides were prepared and stained according to Carvalho et
al. (2007) and analyzed on a Nikon eclipse Ci-S microscope (Nikon). Prometaphases
and metaphases were captured using the 100× objective and a CCD camera (Nikon
EvolutionTM) coupled to a Nikon microscope 80i (Nikon). About 100 slides were
analyzed for each species. Chromosome
morphometry was characterized and the class was determined as proposed by Levan et al. (1964) and reviewed by Guerra (1986).Using chromosome morphometric data (total, short and long arm length), the standardized
Euclidean Distance and Unweighted Pair-Group Method Average (UPGMA) was
applied to each species. In addition, the value of the relative size (% size in relation
to sum of the mean values of total length, Table 1)
of each chromosome PageBreakPageBreakwas compared among species by the
Scott-Knott test at 5% probability. Analyses were made using the software R 3.2.4 (R Core Team 2016).
Table 1.
Morphometry and chromosome class performed at least 10 prometaphases/metaphases. In
all species were found chromosomes morphologically indentical, similar and
distinct.
Myrsineparvifolia
Myrsinecoriacea
Myrsineumbellata
Chrom.
Total ± SD
Short
Long
r
Class
Relative size (%)
Total ± SD
Short
Long
r
Class
Relative size (%)
Total ± SD
Short
Long
r
Class
Relative size (%)
1
2.64 ± 0.29
1.01
1.63
1.61
SM
5.60
2.79 ± 0.09
1.24
1.55
1.25
M
6.14
2.72 ± 0.06
1.14
1.59
1.39
M
6.60
2
2.47 ± 0.23
1.09
1.37
1.25
M
5.24
2.45 ± 0.11
1.02
1.42
1.38
M
5.38
2.67 ± 0.06
1.14
1.54
1.35
M
6.48
3
2.45 ± 0.22
0.86
1.59
1.85
SM
5.19
2.35 ± 0.10
1.09
1.26
1.15
M
5.17
2.13 ± 0.16
0.94
1.19
1.26
M
5.16
4
2.44 ± 0.27
0.68
1.75
2.55
SM
5.17
2.30 ± 0.05
1.02
1.27
1.24
M
5.06
2.13 ± 0.08
0.84
1.29
1.53
SM
5.16
5
2.24 ± 0.18
0.71
1.53
2.13
SM
4.76
2.29 ± 0.08
0.99
1.30
1.30
M
5.04
2.08 ± 0.14
0.74
1.34
1.80
SM
5.04
6
2.21 ± 0.17
0.73
1.48
2.00
SM
4.69
2.22 ± 0.17
0.86
1.36
1.57
SM
4.88
1.88 ± 0.11
0.64
1.24
1.92
SM
4.56
7
2.18 ± 0.25
0.81
1.37
1.68
SM
4.62
2.17 ± 0.12
0.78
1.39
1.77
SM
4.77
1.83 ± 0.11
0.79
1.04
1.31
M
4.44
8
2.16 ± 0.27
0.61
1.55
2.51
SM
4.59
2.12 ± 0.11
0.78
1.34
1.71
SM
4.67
1.83 ± 0.09
0.59
1.24
2.08
SM
4.44
9
2.15 ± 0.29
0.86
1.29
1.49
M
4.55
2.04 ± 0.15
0.81
1.23
1.50
SM
4.49
1.83 ± 0.09
0.59
1.24
2.08
SM
4.44
10
2.13 ± 0.25
0.61
1.51
2.45
SM
4.51
2.00 ± 0.10
0.78
1.23
1.56
SM
4.41
1.78 ± 0.12
0.59
1.19
2.00
SM
4.32
11
2.09 ± 0.22
0.79
1.31
1.65
SM
4.44
2.00 ± 0.17
0.75
1.26
1.67
SM
4.41
1.68 ± 0.13
0.59
1.09
1.83
SM
4.08
12
1.99 ± 0.16
0.75
1.23
1.63
SM
4.22
1.89 ± 0.10
0.71
1.18
1.64
SM
4.16
1.68 ± 0.08
0.59
1.09
1.83
SM
4.08
13
1.97 ± 0.23
0.66
1.31
1.96
SM
4.19
1.89 ± 0.07
0.57
1.32
2.31
SM
4.16
1.68 ± 0.10
0.49
1.19
2.40
SM
4.08
14
1.95 ± 0.14
0.65
1.30
2.00
SM
4.14
1.84 ± 0.06
0.55
1.29
2.32
SM
4.06
1.68 ± 0.14
0.66
1.02
1.52
SM
4.08
15
1.93 ± 0.16
0.72
1.21
1.67
SM
4.11
1.81 ± 0.11
0.65
1.16
1.78
SM
3.98
1.58 ± 0.06
0.64
0.94
1.46
M
3.84
16
1.85 ± 0.13
0.65
1.20
1.82
SM
3.93
1.81 ± 0.08
0.57
1.24
2.17
SM
3.98
1.58 ± 0.06
0.69
0.89
1.29
M
3.84
17
1.85 ± 0.23
0.72
1.13
1.56
SM
3.93
1.78 ± 0.04
0.66
1.11
1.66
SM
3.91
1.58 ± 0.09
0.69
0.89
1.29
M
3.84
18
1.84 ± 0.19
0.70
1.15
1.63
SM
3.92
1.71 ± 0.13
0.65
1.06
1.63
SM
3.77
1.58 ± 0.11
0.59
0.99
1.67
SM
3.84
19
1.82 ± 0.22
0.63
1.20
1.89
SM
3.87
1.68 ± 0.11
0.55
1.13
2.03
SM
3.70
1.58 ± 0.08
0.59
0.99
1.67
SM
3.84
20
1.75 ± 0.18
0.68
1.06
1.55
SM
3.71
1.67 ± 0.09
0.58
1.09
1.85
SM
3.69
1.58 ± 0.13
0.49
1.09
2.20
SM
3.84
21
1.68 ± 0.14
0.79
0.89
1.13
M
3.56
1.55 ± 0.16
0.49
1.06
2.17
SM
3.42
1.43 ± 0.14
0.59
0.84
1.42
M
3.48
22
1.66 ± 0.16
0.58
1.08
1.85
SM
3.53
1.55 ± 0.04
0.35
1.20
3.33
A
3.42
1.38 ± 0.11
0.49
0.89
1.80
SM
3.36
23
1.66 ± 0.30
0.58
1.08
1.86
SM
3.53
1.52 ± 0.07
0.39
1.13
2.88
SM
3.34
1.28 ± 0.10
0.59
0.69
1.17
M
3.13
Sum
47.22
16.99
30.23
100.00
45.53
16.96
28.57
100.00
41.30
15.79
25.51
100.00
Chrom = chromosomes;
Total = total length; SD = standard deviation; Long/Short = arm length; r = arm ratio – long/short;
M = metacentric;
SM =
submetacentric; A =
acrocentric; Relative size = % size in relation to sum of the mean values of total
length; Sum
= sum of the mean values.
Morphometry and chromosome class performed at least 10 prometaphases/metaphases. In
all species were found chromosomes morphologically indentical, similar and
distinct.Chrom = chromosomes;
Total = total length; SD = standard deviation; Long/Short = arm length; r = arm ratio – long/short;
M = metacentric;
SM =
submetacentric; A =
acrocentric; Relative size = % size in relation to sum of the mean values of total
length; Sum
= sum of the mean values.
Results
Approximately 60 days after in vitro inoculation, plantlets were obtained for the three
species. All plantlets
exhibited sufficient and morphologically normal leaves and roots for FCM and cytogenetic analyses,
respectively.FCM analysis performed on
leaves collected in the field did not result in histograms showing profile
G0/G1 peaks. So, dithiothreitol antioxidant was replaced by
PEG in the nuclei
isolation buffer OTTO I. This change provided G0/G1 peaks,
exhibiting a coefficient of variation (CV) less than 5% for
and the two internal
standards. The channel of the G0/G1
peak however was closer to than
Thus, based on linearity
international criteria for FCM, was the standard chosen for the
next measurements. The mean 2C value of the male (2C = 6.65 pg ± 0.02) and female (2C =
6.67 pg ± 0.11) individuals were
statistically identical by the F test. Considering these previous
results, the 2C value was measured from leaves of in vitro plantlets. The mean values were
2C = 4.81 pg ± 0.05 for , 2C = 6.60 pg ± 0.14 for
and 2C = 6.63 pg ± 0.13 for
. The mean value of the
in vitro plantlets was
statistically identical to the males and females in the field. Therefore, the mean value
adopted for this species was 2C = 6.65 pg, which was statistically equal to the
.Roots exposed to a 12 h APM provided prometaphases, exhibiting chromosomes at a distinct chromatin
compact level, and metaphases. Enzymatic maceration in 1:5 pectinase solution ensured the
chromosomes remained inside the cell, allowing an accurate determination of 2n = 45 or 2n
= 46. Chromosome number of 2n = 45 was found for 12.60% individuals of
and 8.45% of
, with 2n = 46 for the three
species. Based on these results, the next slides were made from roots of particular
seedlings with 2n = 45 or 2n = 46. Root maceration with 1:20 enzymatic pool for 1h 30 min
supplied chromosomes no damage to the chromatin structure, without overlapping, with
well-defined centromeres and free of cytoplasm debris (Fig. 1).
Figure 1.
First images of the chromosomes. Karyotype of a
individual with 2n = 45
(a) and another with 2n = 46 (b) chromosomes. Note the
different levels of chromatin compaction between the chromosomes of the two
karyotypes. The distinct chromatin compact level was highlighted in (c),
where the same submetacentric chromosome of (above) and the same
acrocentric chromosome of (below) were taken from
two different prometaphases (I and II) and one metaphase (III). Bar = 5 µm.
First images of the chromosomes. Karyotype of a
individual with 2n = 45
(a) and another with 2n = 46 (b) chromosomes. Note the
different levels of chromatin compaction between the chromosomes of the two
karyotypes. The distinct chromatin compact level was highlighted in (c),
where the same submetacentric chromosome of (above) and the same
acrocentric chromosome of (below) were taken from
two different prometaphases (I and II) and one metaphase (III). Bar = 5 µm.Karyotype characterization was possible only after carefully testing the time and
concentration of the APM
antitubulin and cell wall enzymes. presented a greater total
sum of the length of the chromosomes despite having less nuclear DNA content. For this
species only, we found prometaphase chromosomes showing low level of chromatin compaction
(Fig. 2a), resulting in a higher sum of the total
length (Table 1).
and
did not show pronounced
variation in chromatin compaction, but the quality of the chromosomes allowed us to
characterize the karyotype and to assemble the karyogram (Fig. 2b–c, Table 1).
Figure 2.
karyograms displaying 2n
= 45 (a
and b
) or 2n = 46 chromosomes
(a–c the three species). In all
(a) and
(b)
individuals with 2n = 45, the odd chromosome number was well-marked by absence of the
homologue pair of the chromosome 23. Metacentric and submetacentric chromosomes
prevailing in the karyograms of the three species, with only one acrocentric
chromosome was identified in (b chromosome
22). Although showing approximately 2C = 1.50 pg less DNA,
(a) displayed the same
chromosome number in relation to the other species (b
c
). For all species,
morphometric analyses showed identical, similar and distinct chromosome pairs with
regard to morphometry and class. The similarity of some chromosomes was highlighted
from the metacentric chromosome pairs 4 and 5 (d above) and
submetacentric 15 and 16 (d below) of
. In contrast, other
chromosomes showed singular morphology, as the chromosome 1 and 2 of all species, the
22 of , which is the single
acrocentric chromosome, and the chromosome 23. Bar = 5 µm.
karyograms displaying 2n
= 45 (a
and b
) or 2n = 46 chromosomes
(a–c the three species). In all
(a) and
(b)
individuals with 2n = 45, the odd chromosome number was well-marked by absence of the
homologue pair of the chromosome 23. Metacentric and submetacentric chromosomes
prevailing in the karyograms of the three species, with only one acrocentric
chromosome was identified in (b chromosome
22). Although showing approximately 2C = 1.50 pg less DNA,
(a) displayed the same
chromosome number in relation to the other species (b
c
). For all species,
morphometric analyses showed identical, similar and distinct chromosome pairs with
regard to morphometry and class. The similarity of some chromosomes was highlighted
from the metacentric chromosome pairs 4 and 5 (d above) and
submetacentric 15 and 16 (d below) of
. In contrast, other
chromosomes showed singular morphology, as the chromosome 1 and 2 of all species, the
22 of , which is the single
acrocentric chromosome, and the chromosome 23. Bar = 5 µm.Morphometric analysis was used to classify the chromosomes and evidence similarities and
differences among species karyotypes. presented three metacentric
(2, 9 and 21) and 20 submetacentric (1, 3–8, 10–20, 22 and 23) chromosome pairs,
showed five metacentric (1–5),
17 submetacentric (6–21 PageBreakand 23) and one acrocentric (22) chromosome pairs,
and displayed nine metacentric
(1–3, 7, 15–17, 21 and 23) and 14 submetacentric (4–6, 8–14, 17, 18, 20 and 22) chromosome
pairs (Fig. 2, Table 1).Morphologically similar and identical chromosomes groups were found in all species.
presented sets of two
chromosome pairs (5–6, 13–14, 16–17 and 22–23), as did
(4–5, 10–11, 13–14, 15–16 and
19–20), and presented three sets of two
(11–12, 16–17 and 18–19) and one set of three chromosome pairs (8–10). The other
chromosome pairs in each species were considered morphologically distinct (Fig. 2, Table 1, 2). Using morphometric data and applying the UPGMA
statistical analysis, the chromosomes of each
species were grouped in three clusters in all species (Fig. 3a–c, Table 2). Chromosome groups formed
by qualitative analysis of all species were clustered by UPGMA,
supporting previous findings.
Table 2.
Chromosome groups of the karyotype suggested from
karyogram evaluation (Fig. 2 and Table 1) and confirmed by UPGMA
clustering (Fig. 3a–c).
Species
*Karyogram evaluation
**UPGMA clustering
***Confirmed chromosome groups
Myrsineparvifolia
5–6; 13–14; 16–17; and 22–23
1 and 2; 3–11; and 12–23
5–6; 13–14; 16–17; and 22–23
Myrsinecoriacea
4–5; 9–10; 13–14; 15–16; and 19–20
1; 2–11; and 12–23
4–5; 9–10; 13–14; 15–16; and 19–20
Myrsineumbellata
8–10; 11–12; 16–17; and 18–19
1 and 2; 3–5, 7; and 6, 8–23
8–10; 11–12; 16–17; and 18–19
* Chromosome groups morphologically identical or similar defined from all
morphometric data (total length, short and long arms, r = ratio long/short arm,
chromosomal class; relative size) and observation of the karyogram.
** Chromosome groups formed by UPGMA clustering method using data about total, short and long arms
length.
*** Common chromosome groups evidenced by two analyses (qualitative
x quantitative).
Figure 3.
a–c Multivariate clustering generated from chromosome morphometric data
(total, long and short arms length). Mojena’s criteria showed three clusters for
(a),
(b) and
(c) with cut
point between 1.5 to 1.8. This analysis confirmed the morphological discrepancy of the
chromosome 1, and the similarity of other chromosomes (d) Graphic
provided by comparison between mean relative size (% size in relation to sum of the
mean values of total length, Table 1) of each
chromosome of and
. The chromosomes 1, 2, 6,
7, 11, 14, 19 and 23 (*) between the species are statistically different in relation
to mean relative size according to Scott Knott test at 5% of probability.
a–c Multivariate clustering generated from chromosome morphometric data
(total, long and short arms length). Mojena’s criteria showed three clusters for
(a),
(b) and
(c) with cut
point between 1.5 to 1.8. This analysis confirmed the morphological discrepancy of the
chromosome 1, and the similarity of other chromosomes (d) Graphic
provided by comparison between mean relative size (% size in relation to sum of the
mean values of total length, Table 1) of each
chromosome of and
. The chromosomes 1, 2, 6,
7, 11, 14, 19 and 23 (*) between the species are statistically different in relation
to mean relative size according to Scott Knott test at 5% of probability.As the mean 2C values of (6.60 pg) and
(6.65 pg) were statistically
identical, the Scott-Knott test was used to compare the relative size (Table 1) of each chromosome of these species. Chromosomes 1,
2, 6, 7, 11, 14, 19 and 23 differed between the species, while the others were
statistically identical (Fig. 3d, Table 2).Chromosome groups of the karyotype suggested from
karyogram evaluation (Fig. 2 and Table 1) and confirmed by UPGMA
clustering (Fig. 3a–c).* Chromosome groups morphologically identical or similar defined from all
morphometric data (total length, short and long arms, r = ratio long/short arm,
chromosomal class; relative size) and observation of the karyogram.** Chromosome groups formed by UPGMA clustering method using data about total, short and long arms
length.*** Common chromosome groups evidenced by two analyses (qualitative
x quantitative).
Discussion
The first step in FCM was
to define the best antioxidant and internal standard. The presence of secondary metabolites
in the leaves, such as tannins,
saponins, flavonoids and steroids (Abbi et al. 2011)
made this challenging. These compounds probably prevented us from measuring the 2C value in
individuals from the field when the OTTO I buffer (Otto
1990) was supplemented with dithiothreitol. Cytosolic compounds can reduce or
inhibit the interaction of the fluorochromes and DNA during the nuclei staining step (Noirot et al. 2003). Antioxidants inhibit this
interference, preserving the chromatin structure (Shapiro
2003). Nevertheless, the dithiothreitol was not efficient at providing nuclei
suspensions suitable for FCM. Thus, this compound, which is more specific for molecules that possess free
sulfhydryl groups, was replaced PageBreakPageBreakby PEG because of its wide
spectrum for antioxidant activities, an effect called PEGylation (Term Fisher Scientific 2016). Due to this effect, PEG was more efficient at
inhibiting the action of cytosolic compounds, resulting in G0/G1 peaks
for and
with CV below 5%. Owing to
the linearity parameter, was a more adequate standard
relative to , which reduced measurement
errors.Secondary metabolite interference was completely resolved for other
species using in vitro
plantlets propagated in a controlled environment. FCM measurements from leaves collected in the field may have
been influenced by environmental conditions. Secondary metabolite production is influenced
by humidity, temperature, light intensity and the availability of water and nutrients (Akula and Ravishankar 2011). Thus, the conditions at each
elevation gradient can be associated with the FCM result, suggesting a differentiated production of secondary
metabolic compounds for at
distinct altitudes.Genome size in had only been reported for
as 2C = 2.46 pg (Hanson et al. 2003), which was measured by Feulgen
microdensitometry using sp.
as standard. Levels of endoreduplication in cells of
, varying from 2C to 64C, were
reported by Pal et al. (2004). Thus, the differences,
which were about 200% between the values found for
species in this study and the
value observed for , can be related to the C value
of used as reference.Values close to and
species were reported for
Mill. (2C = 6.60 pg) and
L. (2C = 5.58 pg). Higher DNA
contents were described for Mill. (2C = 13.56 pg),
Baumg. (2C = 12.36 pg), and lower
values for Simonk (2C = 3.16 pg) and
Huds (2C = 0.47 pg) (Bennett and
Leitch 2012). The interspecific variation for the 2C DNA value found in this study, as for
other species of (Bennett and Leitch 2012), suggests
the occurrence of karyotype changes.As well as for FCM,
karyotype data about species in the literature are
very limited, with only the chromosome number reported (Beuzenberg and Hair 1983, Dawson 1995,
Dawson 2000, Molero
et al. 2002, Molero et al. 2006, Rice et al. 2015). In vitro
plantlets were fundamental for
providing sufficient quantities of roots for the cytogenetic study independent of the
reproductive period. Meticulous standardization of the antimitotic agent and enzymatic
maceration were also essential for accurate chromosomal characterization.Chromosome number 2n = 46 (Beuzenberg and Hair 1983,
Dawson 1995, Dawson
2000, Molero et al. 2002, Rice et al. 2015, present study) and 2n = 48 (Molero et al. 2006) had been reported, but this was the
first record of 2n = 45. The odd chromosome number 2n = 45 was well-marked by absence of the
homologue pair of the chromosome 23 (Fig. 2). So, other
cytogenetic approaches should be performed from
individuals separately to know the cause of this aneuploidy.Some chromosome groups determined by statistical analysis are morphologically distinct,
such as chromosomes 22 and 23 of . Although clustered (Fig. 3b), these chromosomes are cytogenetically distinct, with
22 being acrocentric PageBreakand 23 submetacentric (Fig. 2b, Table 2). Likewise, distinct
chromosomes clustered in (Fig. 3a, Table 2) and
(Fig. 3c, Table 2). Chromosome 1 of
and 1 and 2 of
and
presented the highest contrast,
considering the morphology and Euclidean distances (Fig. 2, Fig. 3). Similarities and differences
regarding relative size (% size in relation to sum of the mean values of total length, Table
1) were shown between
and
through the Scott-Knott test.
The similarities, which were shown for some chromosomes, imply that these species could have
originated from a common ancestor. The distinct chromosomes are likely to be attributed to
karyotype changes that happened throughout their evolution, altering the chromosome relative
size and contributing to taxa diversification. Comparative investigations of the karyotypes
of related species have usually been applied to infer the evolutionary role of karyotypic
modifications in different taxa and to describe the pattern and directions of chromosomal
evolution within a group (Stebbins 1971, Soltis and Soltis 2012, Amaral-Silva et al. 2016).Based on the constant chromosome number displayed by
species, interspecific
variation of the nuclear 2C value between compared to
and
was also caused by karyotype
alterations. The changes to the nuclear DNA content have also been attributed to structural
rearrangements and/or heterochromatin polymorphisms (Pellicer et al. 2014, Amaral-Silva et al.
2016).In conclusion, the first karyotype description and data about nuclear 2C value were shown
for three species. Besides of the
comparison between them, these data represent the basis to understand karyotype evolution in
.
Author contribution statement
The authors Carvalho RF, Amaral-Silva PM, Spadeto MS and Clarindo WR conceived, designed
and conducted the tissue culture, flow cytometry and cytogenetic approaches. Carvalho CR
contributed the flow cytometry analysis. Amaral-Silva PP and Carrijo TT collected and
identified the species. Nunes ACP did the
statistical analysis. All authors contributed equally to manuscript editing and revision
and approved the final manuscript for submission.
Conflict of interest
The authors declare they have no conflict of interest.
Authors: Michael Chester; Joseph P Gallagher; V Vaughan Symonds; Ana Veruska Cruz da Silva; Evgeny V Mavrodiev; Andrew R Leitch; Pamela S Soltis; Douglas E Soltis Journal: Proc Natl Acad Sci U S A Date: 2012-01-06 Impact factor: 11.205
Authors: Filip Kolár; Magdalena Lucanová; Petr Vít; Tomás Urfus; Jindrich Chrtek; Tomás Fér; Friedrich Ehrendorfer; Jan Suda Journal: Ann Bot Date: 2013-04-14 Impact factor: 4.357