Literature DB >> 21850594

C-value reassessment of plant standards: an image cytometry approach.

Milene Miranda Praça-Fontes1, Carlos Roberto Carvalho, Wellington Ronildo Clarindo.   

Abstract

Image cytometry (ICM) has been used to measure DNA 2C-values by evaluating the optical density of Feulgen-stained nuclei. This optical measurement is carried out using three basic tools: microscopy, digital video camera, and image analysis software. Because ICM has been applied to plants, some authors have remarked that studies should be performed before this technique can be accepted as an accurate method for determination of plant genome size. Based on this, the 2C-value of eight plants, which are widely used as standards in DNA quantifications, was reassessed in a cascade-like manner, from A. thaliana through R. sativus, S. lycopersicum, Glycine max, Z. mays, P. sativum, V. faba, to A. cepa. The mean 2C-values of all plants were statistically compared to the values reported by other authors using flow cytometry and/or ICM. These analyses demonstrated that ICM is an accurate and reliable method for 2C-value measurement, representing an attractive alternative to flow cytometry. Statistical comparison of the results also indicated Glycine max 'Polanka' as the most adequate primary standard. However, distinct authors have been advised that 2C DNA content of the reference standard should be close to that of the sample. As three further approaches also revisited the 2C-value of these eight plants, we have thus proposed a mean 2C-value for each eight species.

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Year:  2011        PMID: 21850594     DOI: 10.1007/s00299-011-1135-6

Source DB:  PubMed          Journal:  Plant Cell Rep        ISSN: 0721-7714            Impact factor:   4.570


  28 in total

1.  From pixels to picograms: a beginners' guide to genome quantification by Feulgen image analysis densitometry.

Authors:  David C Hardie; T Ryan Gregory; Paul D N Hebert
Journal:  J Histochem Cytochem       Date:  2002-06       Impact factor: 2.479

2.  Standardisation of DNA quantitation by image analysis: quality control of instrumentation.

Authors:  M Puech; F Giroud
Journal:  Cytometry       Date:  1999-05-01

Review 3.  Nuclear genome size: are we getting closer?

Authors:  Jaroslav Dolezel; Johann Greilhuber
Journal:  Cytometry A       Date:  2010-07       Impact factor: 4.355

4.  Circumpolar phylogeography of Juncus biglumis (Juncaceae) inferred from AFLP fingerprints, cpDNA sequences, nuclear DNA content and chromosome numbers.

Authors:  Peter Schönswetter; Jan Suda; Magnus Popp; Hanna Weiss-Schneeweiss; Christian Brochmann
Journal:  Mol Phylogenet Evol       Date:  2006-07-06       Impact factor: 4.286

Review 5.  Consensus report of the ESACP task force on standardization of diagnostic DNA image cytometry. European Society for Analytical Cellular Pathology.

Authors:  A Böcking; F Giroud; A Reith
Journal:  Anal Cell Pathol       Date:  1995-01       Impact factor: 2.916

6.  Revisiting the DNA C-values of the genome size-standards used in plant flow cytometry to choose the "best primary standards".

Authors:  Milene Miranda Praça-Fontes; Carlos Roberto Carvalho; Wellington Ronildo Clarindo; Cosme Damião Cruz
Journal:  Plant Cell Rep       Date:  2011-02-13       Impact factor: 4.570

Review 7.  The Feulgen reaction 75 years on.

Authors:  P Chieco; M Derenzini
Journal:  Histochem Cell Biol       Date:  1999-05       Impact factor: 4.304

8.  DNA content differences between male and female chicken (Gallus gallus domesticus) nuclei and Z and W chromosomes resolved by image cytometry.

Authors:  Maria Andréia Corrêa Mendonça; Carlos Roberto Carvalho; Wellington Ronildo Clarindo
Journal:  J Histochem Cytochem       Date:  2009-10-29       Impact factor: 2.479

9.  Analysis of nuclear DNA content in Capsicum (Solanaceae) by flow cytometry and Feulgen densitometry.

Authors:  Eduardo A Moscone; Monika Baranyi; Irma Ebert; Johann Greilhuber; Friedrich Ehrendorfer; Armando T Hunziker
Journal:  Ann Bot       Date:  2003-07       Impact factor: 4.357

Review 10.  Fourth updated ESACP consensus report on diagnostic DNA image cytometry.

Authors:  G Haroske; J P Baak; H Danielsen; F Giroud; A Gschwendtner; M Oberholzer; A Reith; P Spieler; A Böcking
Journal:  Anal Cell Pathol       Date:  2001       Impact factor: 2.916

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Journal:  Plant Reprod       Date:  2013-01-11       Impact factor: 3.767

2.  Reassessment of the Genome Size in Elaeis guineensis and Elaeis oleifera, and Its Interspecific Hybrid.

Authors:  Julceia Camillo; André P Leão; Alexandre A Alves; Eduardo F Formighieri; Ana Ls Azevedo; Juliana D Nunes; Guy de Capdeville; Jean K de A Mattos; Manoel T Souza
Journal:  Genomics Insights       Date:  2014-09-03

3.  Updating the maize karyotype by chromosome DNA sizing.

Authors:  Jéssica Coutinho Silva; Carlos Roberto Carvalho; Wellington Ronildo Clarindo
Journal:  PLoS One       Date:  2018-01-02       Impact factor: 3.240

4.  Refinement of the karyological aspects of Psidium guineense (Swartz, 1788): a comparison with Psidium guajava (Linnaeus, 1753).

Authors:  Anelise Machado Marques; Amélia Carlos Tuler; Carlos Roberto Carvalho; Tatiana Tavares Carrijo; Marcia Flores da Silva Ferreira; Wellington Ronildo Clarindo
Journal:  Comp Cytogenet       Date:  2016-02-02       Impact factor: 1.800

5.  Fern genomes elucidate land plant evolution and cyanobacterial symbioses.

Authors:  Fay-Wei Li; Paul Brouwer; Lorenzo Carretero-Paulet; Shifeng Cheng; Jan de Vries; Pierre-Marc Delaux; Ariana Eily; Nils Koppers; Li-Yaung Kuo; Zheng Li; Mathew Simenc; Ian Small; Eric Wafula; Stephany Angarita; Michael S Barker; Andrea Bräutigam; Claude dePamphilis; Sven Gould; Prashant S Hosmani; Yao-Moan Huang; Bruno Huettel; Yoichiro Kato; Xin Liu; Steven Maere; Rose McDowell; Lukas A Mueller; Klaas G J Nierop; Stefan A Rensing; Tanner Robison; Carl J Rothfels; Erin M Sigel; Yue Song; Prakash R Timilsena; Yves Van de Peer; Hongli Wang; Per K I Wilhelmsson; Paul G Wolf; Xun Xu; Joshua P Der; Henriette Schluepmann; Gane K-S Wong; Kathleen M Pryer
Journal:  Nat Plants       Date:  2018-07-02       Impact factor: 15.793

6.  Repetitive sequences and structural chromosome alterations promote intraspecific variations in Zea mays L. karyotype.

Authors:  Jéssica Coutinho Silva; Fernanda Aparecida Ferrari Soares; Mariana Cansian Sattler; Wellington Ronildo Clarindo
Journal:  Sci Rep       Date:  2020-06-01       Impact factor: 4.379

7.  Autotetraploid Coffea canephora and Auto-Alloctaploid Coffea arabica From In Vitro Chromosome Set Doubling: New Germplasms for Coffea.

Authors:  Lucimara Ribeiro Venial; Maria Andréia Corrêa Mendonça; Paulo Marcos Amaral-Silva; Guilherme Bravim Canal; Ana Beatriz Rocha de Jesus Passos; Adésio Ferreira; Taís Cristina Bastos Soares; Wellington Ronildo Clarindo
Journal:  Front Plant Sci       Date:  2020-03-04       Impact factor: 5.753

  7 in total

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