Literature DB >> 21242078

Modern fluorescent proteins and imaging technologies to study gene expression, nuclear localization, and dynamics.

Bin Wu1, Kiryl D Piatkevich, Timothée Lionnet, Robert H Singer, Vladislav V Verkhusha.   

Abstract

Recent developments in reagent design can address problems in single cells that were not previously approachable. We have attempted to foresee what will become possible, and the sorts of biological problems that become tractable with these novel reagents. We have focused on the novel fluorescent proteins that allow convenient multiplexing, and provide for a time-dependent analysis of events in single cells. Methods for fluorescently labeling specific molecules, including endogenously expressed proteins and mRNA have progressed and are now commonly used in a variety of organisms. Finally, sensitive microscopic methods have become more routine practice. This article emphasizes that the time is right to coordinate these approaches for a new initiative on single cell imaging of biological molecules.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21242078      PMCID: PMC3143818          DOI: 10.1016/j.ceb.2010.12.004

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  49 in total

1.  Fast and precise protein tracking using repeated reversible photoactivation.

Authors:  Dmitriy M Chudakov; Tatyana V Chepurnykh; Vsevolod V Belousov; Sergey Lukyanov; Konstantin A Lukyanov
Journal:  Traffic       Date:  2006-08-02       Impact factor: 6.215

2.  In vivo dynamics of RNA polymerase II transcription.

Authors:  Xavier Darzacq; Yaron Shav-Tal; Valeria de Turris; Yehuda Brody; Shailesh M Shenoy; Robert D Phair; Robert H Singer
Journal:  Nat Struct Mol Biol       Date:  2007-08-05       Impact factor: 15.369

3.  Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light.

Authors:  Nadya G Gurskaya; Vladislav V Verkhusha; Alexander S Shcheglov; Dmitry B Staroverov; Tatyana V Chepurnykh; Arkady F Fradkov; Sergey Lukyanov; Konstantin A Lukyanov
Journal:  Nat Biotechnol       Date:  2006-03-19       Impact factor: 54.908

4.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy.

Authors:  Suliana Manley; Jennifer M Gillette; George H Patterson; Hari Shroff; Harald F Hess; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

5.  Improving membrane voltage measurements using FRET with new fluorescent proteins.

Authors:  Hidekazu Tsutsui; Satoshi Karasawa; Yasushi Okamura; Atsushi Miyawaki
Journal:  Nat Methods       Date:  2008-07-11       Impact factor: 28.547

Review 6.  Fluorescent proteins as biomarkers and biosensors: throwing color lights on molecular and cellular processes.

Authors:  Olesya V Stepanenko; Vladislav V Verkhusha; Irina M Kuznetsova; Vladimir N Uversky; K K Turoverov
Journal:  Curr Protein Pept Sci       Date:  2008-08       Impact factor: 3.272

7.  Improving the photostability of bright monomeric orange and red fluorescent proteins.

Authors:  Nathan C Shaner; Michael Z Lin; Michael R McKeown; Paul A Steinbach; Kristin L Hazelwood; Michael W Davidson; Roger Y Tsien
Journal:  Nat Methods       Date:  2008-05-04       Impact factor: 28.547

8.  Two-photon laser scanning fluorescence microscopy.

Authors:  W Denk; J H Strickler; W W Webb
Journal:  Science       Date:  1990-04-06       Impact factor: 47.728

9.  Oscillations in NF-kappaB signaling control the dynamics of gene expression.

Authors:  D E Nelson; A E C Ihekwaba; M Elliott; J R Johnson; C A Gibney; B E Foreman; G Nelson; V See; C A Horton; D G Spiller; S W Edwards; H P McDowell; J F Unitt; E Sullivan; R Grimley; N Benson; D Broomhead; D B Kell; M R H White
Journal:  Science       Date:  2004-10-22       Impact factor: 47.728

10.  Localization of ASH1 mRNA particles in living yeast.

Authors:  E Bertrand; P Chartrand; M Schaefer; S M Shenoy; R H Singer; R M Long
Journal:  Mol Cell       Date:  1998-10       Impact factor: 17.970

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  54 in total

1.  New technologies for 21st century plant science.

Authors:  David W Ehrhardt; Wolf B Frommer
Journal:  Plant Cell       Date:  2012-02-24       Impact factor: 11.277

2.  Tandem fluorescent protein timers for in vivo analysis of protein dynamics.

Authors:  Anton Khmelinskii; Philipp J Keller; Anna Bartosik; Matthias Meurer; Joseph D Barry; Balca R Mardin; Andreas Kaufmann; Susanne Trautmann; Malte Wachsmuth; Gislene Pereira; Wolfgang Huber; Elmar Schiebel; Michael Knop
Journal:  Nat Biotechnol       Date:  2012-06-24       Impact factor: 54.908

3.  Quantitative Analysis of Intracellular Fluorescent Foci in Live Bacteria.

Authors:  M Charl Moolman; Jacob W J Kerssemakers; Nynke H Dekker
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

4.  Red fluorescent proteins (RFPs) and RFP-based biosensors for neuronal imaging applications.

Authors:  Yi Shen; Tiffany Lai; Robert E Campbell
Journal:  Neurophotonics       Date:  2015-06-19       Impact factor: 3.593

5.  Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine.

Authors:  Vladimir Z Pletnev; Nadya V Pletneva; Konstantin A Lukyanov; Ekaterina A Souslova; Arkady F Fradkov; Dmitry M Chudakov; Tatyana Chepurnykh; Ilia V Yampolsky; Alexander Wlodawer; Zbigniew Dauter; Sergei Pletnev
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-08-17

6.  A structural basis for reversible photoswitching of absorbance spectra in red fluorescent protein rsTagRFP.

Authors:  Sergei Pletnev; Fedor V Subach; Zbigniew Dauter; Alexander Wlodawer; Vladislav V Verkhusha
Journal:  J Mol Biol       Date:  2012-01-30       Impact factor: 5.469

Review 7.  Imaging translation in single cells using fluorescent microscopy.

Authors:  Jeffrey A Chao; Young J Yoon; Robert H Singer
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-11-01       Impact factor: 10.005

8.  VIPERnano: Improved Live Cell Intracellular Protein Tracking.

Authors:  Erin Morgan; Julia Doh; Kimberly Beatty; Norbert Reich
Journal:  ACS Appl Mater Interfaces       Date:  2019-10-01       Impact factor: 9.229

9.  A FRET-facilitated photoswitching using an orange fluorescent protein with the fast photoconversion kinetics.

Authors:  Oksana M Subach; David Entenberg; John S Condeelis; Vladislav V Verkhusha
Journal:  J Am Chem Soc       Date:  2012-08-27       Impact factor: 15.419

10.  Fluorescence from Multiple Chromophore Hydrogen-Bonding States in the Far-Red Protein TagRFP675.

Authors:  Patrick E Konold; Eunjin Yoon; Junghwa Lee; Samantha L Allen; Prem P Chapagain; Bernard S Gerstman; Chola K Regmi; Kiryl D Piatkevich; Vladislav V Verkhusha; Taiha Joo; Ralph Jimenez
Journal:  J Phys Chem Lett       Date:  2016-07-27       Impact factor: 6.475

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