Literature DB >> 26158012

Red fluorescent proteins (RFPs) and RFP-based biosensors for neuronal imaging applications.

Yi Shen1, Tiffany Lai1, Robert E Campbell1.   

Abstract

The inherent advantages of red-shifted fluorescent proteins and fluorescent protein-based biosensors for the study of signaling processes in neurons and other tissues have motivated the development of a plethora of new tools. Relative to green fluorescent proteins (GFPs) and other blue-shifted alternatives, red fluorescent proteins (RFPs) provide the inherent advantages of lower phototoxicity, lower autofluorescence, and deeper tissue penetration associated with longer wavelength excitation light. All other factors being the same, the multiple benefits of using RFPs make these tools seemingly ideal candidates for use in neurons and, ultimately, the brain. However, for many applications, the practical utility of RFPs still falls short of the preferred GFPs. We present an overview of RFPs and RFP-based biosensors, with an emphasis on their reported applications in neuroscience.

Entities:  

Keywords:  calcium ion; fluorescence imaging; genetically encoded biosensors; neurotransmitters; red fluorescent protein; voltage

Year:  2015        PMID: 26158012      PMCID: PMC4478792          DOI: 10.1117/1.NPh.2.3.031203

Source DB:  PubMed          Journal:  Neurophotonics        ISSN: 2329-423X            Impact factor:   3.593


  130 in total

1.  Identification of different emitting species in the red fluorescent protein DsRed by means of ensemble and single-molecule spectroscopy.

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Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-27       Impact factor: 11.205

2.  Imaging dynamic redox changes in mammalian cells with green fluorescent protein indicators.

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Journal:  J Biol Chem       Date:  2004-02-25       Impact factor: 5.157

3.  Generation of monomeric reversibly switchable red fluorescent proteins for far-field fluorescence nanoscopy.

Authors:  Andre C Stiel; Martin Andresen; Hannes Bock; Michael Hilbert; Jessica Schilde; Andreas Schönle; Christian Eggeling; Alexander Egner; Stefan W Hell; Stefan Jakobs
Journal:  Biophys J       Date:  2008-07-25       Impact factor: 4.033

Review 4.  Chromophore transformations in red fluorescent proteins.

Authors:  Fedor V Subach; Vladislav V Verkhusha
Journal:  Chem Rev       Date:  2012-05-04       Impact factor: 60.622

5.  Photoactivatable mCherry for high-resolution two-color fluorescence microscopy.

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Journal:  Nat Methods       Date:  2009-01-25       Impact factor: 28.547

6.  Synapto-pHluorins: genetically encoded reporters of synaptic transmission.

Authors:  Gero Miesenböck
Journal:  Cold Spring Harb Protoc       Date:  2012-02-01

7.  A photoswitchable orange-to-far-red fluorescent protein, PSmOrange.

Authors:  Oksana M Subach; George H Patterson; Li-Min Ting; Yarong Wang; John S Condeelis; Vladislav V Verkhusha
Journal:  Nat Methods       Date:  2011-07-31       Impact factor: 28.547

8.  Circular permutation of red fluorescent proteins.

Authors:  Bo Shui; Qi Wang; Frank Lee; Laura J Byrnes; Dmitry M Chudakov; Sergey A Lukyanov; Holger Sondermann; Michael I Kotlikoff
Journal:  PLoS One       Date:  2011-05-27       Impact factor: 3.240

9.  Autophagosomes initiate distally and mature during transport toward the cell soma in primary neurons.

Authors:  Sandra Maday; Karen E Wallace; Erika L F Holzbaur
Journal:  J Cell Biol       Date:  2012-02-13       Impact factor: 10.539

10.  Extended Stokes shift in fluorescent proteins: chromophore-protein interactions in a near-infrared TagRFP675 variant.

Authors:  Kiryl D Piatkevich; Vladimir N Malashkevich; Kateryna S Morozova; Nicolai A Nemkovich; Steven C Almo; Vladislav V Verkhusha
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

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  14 in total

Review 1.  Interrogating cyclic AMP signaling using optical approaches.

Authors:  Jason Y Jiang; Jeffrey L Falcone; Silvana Curci; Aldebaran M Hofer
Journal:  Cell Calcium       Date:  2017-03-01       Impact factor: 6.817

2.  All-optical functional synaptic connectivity mapping in acute brain slices using the calcium integrator CaMPARI.

Authors:  Timothy A Zolnik; Fern Sha; Friedrich W Johenning; Eric R Schreiter; Loren L Looger; Matthew E Larkum; Robert N S Sachdev
Journal:  J Physiol       Date:  2016-12-14       Impact factor: 5.182

Review 3.  Fluorescence-guided resection of brain tumor: review of the significance of intraoperative quantification of protoporphyrin IX fluorescence.

Authors:  Zheng Huang; Songsheng Shi; Haixia Qiu; Desheng Li; Jian Zou; Shaoshan Hu
Journal:  Neurophotonics       Date:  2017-01-12       Impact factor: 3.593

4.  A Bright, Nontoxic, and Non-aggregating red Fluorescent Protein for Long-Term Labeling of Fine Structures in Neurons.

Authors:  Lin Ning; Yang Geng; Matthew Lovett-Barron; Xiaoman Niu; Mengying Deng; Liang Wang; Niloufar Ataie; Alex Sens; Ho-Leung Ng; Shoudeng Chen; Karl Deisseroth; Michael Z Lin; Jun Chu
Journal:  Front Cell Dev Biol       Date:  2022-06-29

5.  Neurophotonic tools for microscopic measurements and manipulation: status report.

Authors:  Ahmed S Abdelfattah; Sapna Ahuja; Taner Akkin; Srinivasa Rao Allu; Joshua Brake; David A Boas; Erin M Buckley; Robert E Campbell; Anderson I Chen; Xiaojun Cheng; Tomáš Čižmár; Irene Costantini; Massimo De Vittorio; Anna Devor; Patrick R Doran; Mirna El Khatib; Valentina Emiliani; Natalie Fomin-Thunemann; Yeshaiahu Fainman; Tomas Fernandez-Alfonso; Christopher G L Ferri; Ariel Gilad; Xue Han; Andrew Harris; Elizabeth M C Hillman; Ute Hochgeschwender; Matthew G Holt; Na Ji; Kıvılcım Kılıç; Evelyn M R Lake; Lei Li; Tianqi Li; Philipp Mächler; Evan W Miller; Rickson C Mesquita; K M Naga Srinivas Nadella; U Valentin Nägerl; Yusuke Nasu; Axel Nimmerjahn; Petra Ondráčková; Francesco S Pavone; Citlali Perez Campos; Darcy S Peterka; Filippo Pisano; Ferruccio Pisanello; Francesca Puppo; Bernardo L Sabatini; Sanaz Sadegh; Sava Sakadzic; Shy Shoham; Sanaya N Shroff; R Angus Silver; Ruth R Sims; Spencer L Smith; Vivek J Srinivasan; Martin Thunemann; Lei Tian; Lin Tian; Thomas Troxler; Antoine Valera; Alipasha Vaziri; Sergei A Vinogradov; Flavia Vitale; Lihong V Wang; Hana Uhlířová; Chris Xu; Changhuei Yang; Mu-Han Yang; Gary Yellen; Ofer Yizhar; Yongxin Zhao
Journal:  Neurophotonics       Date:  2022-04-27       Impact factor: 4.212

6.  A Photostable Silicon Rhodamine Platform for Optical Voltage Sensing.

Authors:  Yi-Lin Huang; Alison S Walker; Evan W Miller
Journal:  J Am Chem Soc       Date:  2015-08-13       Impact factor: 15.419

7.  Safety markers for rhabdomyosarcoma cells using an in vivo imaging system.

Authors:  Shutong Du; Lian Meng; Lingxie Song; Pengpeng Zhang; Xi Shou; Chunxia Liu; Feng Li
Journal:  Oncol Lett       Date:  2018-05-22       Impact factor: 2.967

8.  Pushing the Limits of Surface-Enhanced Raman Spectroscopy (SERS) with Deep Learning: Identification of Multiple Species with Closely Related Molecular Structures.

Authors:  Alexis Lebrun; Hubert Fortin; Nicolas Fontaine; Daniel Fillion; Olivier Barbier; Denis Boudreau
Journal:  Appl Spectrosc       Date:  2022-03-26       Impact factor: 3.588

9.  An R-CaMP1.07 reporter mouse for cell-type-specific expression of a sensitive red fluorescent calcium indicator.

Authors:  Philipp Bethge; Stefano Carta; Dayra A Lorenzo; Ladan Egolf; Despoina Goniotaki; Linda Madisen; Fabian F Voigt; Jerry L Chen; Bernard Schneider; Masamichi Ohkura; Junichi Nakai; Hongkui Zeng; Adriano Aguzzi; Fritjof Helmchen
Journal:  PLoS One       Date:  2017-06-22       Impact factor: 3.240

Review 10.  Nanoparticle-Based and Bioengineered Probes and Sensors to Detect Physiological and Pathological Biomarkers in Neural Cells.

Authors:  Dusica Maysinger; Jeff Ji; Eliza Hutter; Elis Cooper
Journal:  Front Neurosci       Date:  2015-12-18       Impact factor: 4.677

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