Literature DB >> 18691124

Fluorescent proteins as biomarkers and biosensors: throwing color lights on molecular and cellular processes.

Olesya V Stepanenko1, Vladislav V Verkhusha, Irina M Kuznetsova, Vladimir N Uversky, K K Turoverov.   

Abstract

Green pan class="Chemical">fluorescent protein (GFP) from jellyfish Aequorea victoria is the most extensively studied and widely used in cell biology protein. GFP-like proteins constitute a fast growing family as several naturally occurring GFP-like proteins have been discovered and enhanced mutants of Aequorea GFP have been created. These mutants differ from wild-type GFP by conformational stability, quantum yield, spectroscopic properties (positions of absorption and fluorescence spectra) and by photochemical properties. GFP-like proteins are very diverse, as they can be not only green, but also blue, orange-red, far-red, cyan, and yellow. They also can have dual-color fluorescence (e.g., green and red) or be non-fluorescent. Some of them possess kindling property, some are photoactivatable, and some are photoswitchable. This review is an attempt to characterize the main color groups of GFP-like proteins, describe their structure and mechanisms of chromophore formation, systemize data on their conformational stability and summarize the main trends of their utilization as markers and biosensors in cell and molecular biology.

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Year:  2008        PMID: 18691124      PMCID: PMC2904242          DOI: 10.2174/138920308785132668

Source DB:  PubMed          Journal:  Curr Protein Pept Sci        ISSN: 1389-2037            Impact factor:   3.272


  206 in total

1.  Novel fluorescent protein from Discosoma coral and its mutants possesses a unique far-red fluorescence.

Authors:  A F Fradkov; Y Chen; L Ding; E V Barsova; M V Matz; S A Lukyanov
Journal:  FEBS Lett       Date:  2000-08-18       Impact factor: 4.124

Review 2.  Protein folding revisited. A polypeptide chain at the folding-misfolding-nonfolding cross-roads: which way to go?

Authors:  V N Uversky
Journal:  Cell Mol Life Sci       Date:  2003-09       Impact factor: 9.261

3.  Frequent fusion and fission of plant mitochondria with unequal nucleoid distribution.

Authors:  Shin-ichi Arimura; Junko Yamamoto; Gen Paul Aida; Mikio Nakazono; Nobuhiro Tsutsumi
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-10       Impact factor: 11.205

4.  Imaging dynamic redox changes in mammalian cells with green fluorescent protein indicators.

Authors:  Colette T Dooley; Timothy M Dore; George T Hanson; W Coyt Jackson; S James Remington; Roger Y Tsien
Journal:  J Biol Chem       Date:  2004-02-25       Impact factor: 5.157

5.  The molecular structure of green fluorescent protein.

Authors:  F Yang; L G Moss; G N Phillips
Journal:  Nat Biotechnol       Date:  1996-10       Impact factor: 54.908

6.  Characterization of metal affinity of green fluorescent protein and its purification through salt promoted, immobilized metal affinity chromatography.

Authors:  Y Li; A Agrawal; J Sakon; R R Beitle
Journal:  J Chromatogr A       Date:  2001-02-16       Impact factor: 4.759

7.  Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications.

Authors:  O Griesbeck; G S Baird; R E Campbell; D A Zacharias; R Y Tsien
Journal:  J Biol Chem       Date:  2001-05-31       Impact factor: 5.157

8.  Split GFP complementation assay: a novel approach to quantitatively measure aggregation of tau in situ: effects of GSK3beta activation and caspase 3 cleavage.

Authors:  Wanjoo Chun; Geoffrey S Waldo; Gail V W Johnson
Journal:  J Neurochem       Date:  2007-10-01       Impact factor: 5.372

9.  Exploration of new chromophore structures leads to the identification of improved blue fluorescent proteins.

Authors:  Hui-wang Ai; Nathan C Shaner; Zihao Cheng; Roger Y Tsien; Robert E Campbell
Journal:  Biochemistry       Date:  2007-04-20       Impact factor: 3.162

10.  A novel 115-kD peripheral membrane protein is required for intercisternal transport in the Golgi stack.

Authors:  M G Waters; D O Clary; J E Rothman
Journal:  J Cell Biol       Date:  1992-09       Impact factor: 10.539

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  44 in total

1.  Expression, purification, crystallization and preliminary X-ray analysis of eCGP123, an extremely stable monomeric green fluorescent protein with reversible photoswitching properties.

Authors:  Craig Don Paul; Daouda A K Traore; Emma Byres; Jamie Rossjohn; Rodney J Devenish; Csaba Kiss; Andrew Bradbury; Matthew C J Wilce; Mark Prescott
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-09-30

2.  Use of green fluorescent protein to monitor fungal growth in biomass hydrolysate.

Authors:  Nancy N Nichols; Joshua C Quarterman; Sarah E Frazer
Journal:  Biol Methods Protoc       Date:  2018-01-29

3.  Weak protein-protein interactions in live cells are quantified by cell-volume modulation.

Authors:  Shahar Sukenik; Pin Ren; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-12       Impact factor: 11.205

Review 4.  Imaging translation in single cells using fluorescent microscopy.

Authors:  Jeffrey A Chao; Young J Yoon; Robert H Singer
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-11-01       Impact factor: 10.005

5.  Modeling spectral tuning in monomeric teal fluorescent protein mTFP1.

Authors:  Igor Topol; Jack Collins; Alexander Nemukhin
Journal:  Biophys Chem       Date:  2010-04-10       Impact factor: 2.352

Review 6.  Subcellular Redox Targeting: Bridging in Vitro and in Vivo Chemical Biology.

Authors:  Marcus J C Long; Jesse R Poganik; Souradyuti Ghosh; Yimon Aye
Journal:  ACS Chem Biol       Date:  2017-01-30       Impact factor: 5.100

Review 7.  MRI reporter genes: applications for imaging of cell survival, proliferation, migration and differentiation.

Authors:  Moriel H Vandsburger; Marina Radoul; Batya Cohen; Michal Neeman
Journal:  NMR Biomed       Date:  2012-12-06       Impact factor: 4.044

8.  Triclosan disrupts immune cell function by depressing Ca2+ influx following acidification of the cytoplasm.

Authors:  Suraj Sangroula; Alan Y Baez Vasquez; Prakash Raut; Bright Obeng; Juyoung K Shim; Grace D Bagley; Bailey E West; John E Burnell; Marissa S Kinney; Christian M Potts; Sasha R Weller; Joshua B Kelley; Samuel T Hess; Julie A Gosse
Journal:  Toxicol Appl Pharmacol       Date:  2020-08-21       Impact factor: 4.219

9.  In vivo transfer of intracellular labels from locally implanted bone marrow stromal cells to resident tissue macrophages.

Authors:  Edyta Pawelczyk; Elaine K Jordan; Arun Balakumaran; Aneeka Chaudhry; Nicole Gormley; Melissa Smith; Bobbi K Lewis; Richard Childs; Pamela G Robey; Joseph A Frank
Journal:  PLoS One       Date:  2009-08-21       Impact factor: 3.240

10.  Intein-mediated site-specific conjugation of Quantum Dots to proteins in vivo.

Authors:  Anna Charalambous; Maria Andreou; Paris A Skourides
Journal:  J Nanobiotechnology       Date:  2009-12-10       Impact factor: 10.435

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