Literature DB >> 21224886

Origins of regulated cell-to-cell variability.

Berend Snijder1, Lucas Pelkmans.   

Abstract

Single-cell measurements and lineage-tracing experiments are revealing that phenotypic cell-to-cell variability is often the result of deterministic processes, despite the existence of intrinsic noise in molecular networks. In most cases, this determinism represents largely uncharacterized molecular regulatory mechanisms, which places the study of cell-to-cell variability in the realm of molecular cell biology. Further research in the field will be important to advance quantitative cell biology because it will provide new insights into the mechanisms by which cells coordinate their intracellular activities in the spatiotemporal context of the multicellular environment.

Mesh:

Year:  2011        PMID: 21224886     DOI: 10.1038/nrm3044

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  95 in total

1.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

Review 2.  Quorum sensing: cell-to-cell communication in bacteria.

Authors:  Christopher M Waters; Bonnie L Bassler
Journal:  Annu Rev Cell Dev Biol       Date:  2005       Impact factor: 13.827

Review 3.  Microbial cell individuality and the underlying sources of heterogeneity.

Authors:  Simon V Avery
Journal:  Nat Rev Microbiol       Date:  2006-08       Impact factor: 60.633

Review 4.  Noise in biological circuits.

Authors:  Michael L Simpson; Chris D Cox; Michael S Allen; James M McCollum; Roy D Dar; David K Karig; John F Cooke
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2009 Mar-Apr

5.  Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes.

Authors:  Beate Neumann; Thomas Walter; Jean-Karim Hériché; Jutta Bulkescher; Holger Erfle; Christian Conrad; Phill Rogers; Ina Poser; Michael Held; Urban Liebel; Cihan Cetin; Frank Sieckmann; Gregoire Pau; Rolf Kabbe; Annelie Wünsche; Venkata Satagopam; Michael H A Schmitz; Catherine Chapuis; Daniel W Gerlich; Reinhard Schneider; Roland Eils; Wolfgang Huber; Jan-Michael Peters; Anthony A Hyman; Richard Durbin; Rainer Pepperkok; Jan Ellenberg
Journal:  Nature       Date:  2010-04-01       Impact factor: 49.962

Review 6.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

7.  Evolvability and hierarchy in rewired bacterial gene networks.

Authors:  Mark Isalan; Caroline Lemerle; Konstantinos Michalodimitrakis; Carsten Horn; Pedro Beltrao; Emanuele Raineri; Mireia Garriga-Canut; Luis Serrano
Journal:  Nature       Date:  2008-04-17       Impact factor: 49.962

8.  Dynamic single-cell imaging of direct reprogramming reveals an early specifying event.

Authors:  Zachary D Smith; Iftach Nachman; Aviv Regev; Alexander Meissner
Journal:  Nat Biotechnol       Date:  2010-05-02       Impact factor: 54.908

9.  The origin of phenotypic heterogeneity in a clonal cell population in vitro.

Authors:  Daniel Stockholm; Rachid Benchaouir; Julien Picot; Philippe Rameau; Thi My Anh Neildez; Gabriel Landini; Corinne Laplace-Builhé; Andras Paldi
Journal:  PLoS One       Date:  2007-04-25       Impact factor: 3.240

Review 10.  Virus entry: open sesame.

Authors:  Mark Marsh; Ari Helenius
Journal:  Cell       Date:  2006-02-24       Impact factor: 41.582

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  135 in total

1.  Heterogeneous expression of the virulence-related adhesin Epa1 between individual cells and strains of the pathogen Candida glabrata.

Authors:  Samantha C Halliwell; Matthew C A Smith; Philippa Muston; Sara L Holland; Simon V Avery
Journal:  Eukaryot Cell       Date:  2011-12-02

2.  Organ aging and susceptibility to cancer may be related to the geometry of the stem cell niche.

Authors:  Krastan B Blagoev
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-14       Impact factor: 11.205

3.  A metric and workflow for quality control in the analysis of heterogeneity in phenotypic profiles and screens.

Authors:  Albert Gough; Tong Ying Shun; D Lansing Taylor; Mark Schurdak
Journal:  Methods       Date:  2015-11-04       Impact factor: 3.608

Review 4.  We are all individuals: causes and consequences of non-genetic heterogeneity in mammalian cells.

Authors:  Alexander Loewer; Galit Lahav
Journal:  Curr Opin Genet Dev       Date:  2011-10-15       Impact factor: 5.578

5.  Moment-based inference predicts bimodality in transient gene expression.

Authors:  Christoph Zechner; Jakob Ruess; Peter Krenn; Serge Pelet; Matthias Peter; John Lygeros; Heinz Koeppl
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-07       Impact factor: 11.205

Review 6.  High-throughput RNA interference screens integrative analysis: Towards a comprehensive understanding of the virus-host interplay.

Authors:  Sandeep Amberkar; Narsis A Kiani; Ralf Bartenschlager; Gualtiero Alvisi; Lars Kaderali
Journal:  World J Virol       Date:  2013-05-12

7.  Designing experiments to understand the variability in biochemical reaction networks.

Authors:  Jakob Ruess; Andreas Milias-Argeitis; John Lygeros
Journal:  J R Soc Interface       Date:  2013-08-28       Impact factor: 4.118

8.  A genome wide RNA interference screening method to identify host factors that modulate influenza A virus replication.

Authors:  Christopher R Chin; Abraham L Brass
Journal:  Methods       Date:  2012-10-02       Impact factor: 3.608

9.  Quantitative live cell imaging reveals a gradual shift between DNA repair mechanisms and a maximal use of HR in mid S phase.

Authors:  Ketki Karanam; Ran Kafri; Alexander Loewer; Galit Lahav
Journal:  Mol Cell       Date:  2012-07-27       Impact factor: 17.970

10.  Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes.

Authors:  Mark-Anthony Bray; Shantanu Singh; Han Han; Chadwick T Davis; Blake Borgeson; Cathy Hartland; Maria Kost-Alimova; Sigrun M Gustafsdottir; Christopher C Gibson; Anne E Carpenter
Journal:  Nat Protoc       Date:  2016-08-25       Impact factor: 13.491

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