Literature DB >> 23036328

A genome wide RNA interference screening method to identify host factors that modulate influenza A virus replication.

Christopher R Chin1, Abraham L Brass.   

Abstract

The use of genome wide RNA interference (RNAi) screens to investigate host-virals interactions has revealed unexpected connections that have improved our understanding of viral pathogenesis and cell biology. This work describes the use of an RNAi screening method employing an immunofluorescence image-based strategy and influenza A virus. We find this approach to be readily implemented, scalable and amenable to the direct evaluation of a variety of viral lifecycles. Published by Elsevier Inc.

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Year:  2012        PMID： 23036328      PMCID： PMC4145670          DOI： 10.1016/j.ymeth.2012.09.009

Source DB:  PubMed          Journal:  Methods        ISSN： 1046-2023            Impact factor:   3.608


  24 in total

Review 1.  Statistical methods for analysis of high-throughput RNA interference screens.

Authors:  Amanda Birmingham; Laura M Selfors; Thorsten Forster; David Wrobel; Caleb J Kennedy; Emma Shanks; Javier Santoyo-Lopez; Dara J Dunican; Aideen Long; Dermot Kelleher; Queta Smith; Roderick L Beijersbergen; Peter Ghazal; Caroline E Shamu
Journal:  Nat Methods       Date:  2009-08       Impact factor: 28.547

Review 2.  Origins of regulated cell-to-cell variability.

Authors:  Berend Snijder; Lucas Pelkmans
Journal:  Nat Rev Mol Cell Biol       Date:  2011-01-12       Impact factor: 94.444

3.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

4.  Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells.

Authors:  S M Elbashir; J Harborth; W Lendeckel; A Yalcin; K Weber; T Tuschl
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

5.  A genetic screen identifies FAN1, a Fanconi anemia-associated nuclease necessary for DNA interstrand crosslink repair.

Authors:  Agata Smogorzewska; Rohini Desetty; Takamune T Saito; Michael Schlabach; Francis P Lach; Mathew E Sowa; Alan B Clark; Thomas A Kunkel; J Wade Harper; Monica P Colaiácovo; Stephen J Elledge
Journal:  Mol Cell       Date:  2010-07-09       Impact factor: 17.970

6.  RNAi screening in mammalian cells to identify novel host cell molecules involved in the regulation of viral infections.

Authors:  Carolyn B Coyne; Sara Cherry
Journal:  Methods Mol Biol       Date:  2011

7.  Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication.

Authors:  Alexander Karlas; Nikolaus Machuy; Yujin Shin; Klaus-Peter Pleissner; Anita Artarini; Dagmar Heuer; Daniel Becker; Hany Khalil; Lesley A Ogilvie; Simone Hess; André P Mäurer; Elke Müller; Thorsten Wolff; Thomas Rudel; Thomas F Meyer
Journal:  Nature       Date:  2010-01-17       Impact factor: 49.962

8.  IFITM3 inhibits influenza A virus infection by preventing cytosolic entry.

Authors:  Eric M Feeley; Jennifer S Sims; Sinu P John; Christopher R Chin; Thomas Pertel; Li-Mei Chen; Gaurav D Gaiha; Bethany J Ryan; Ruben O Donis; Stephen J Elledge; Abraham L Brass
Journal:  PLoS Pathog       Date:  2011-10-27       Impact factor: 6.823

Review 9.  Host cell factors in HIV replication: meta-analysis of genome-wide studies.

Authors:  Frederic D Bushman; Nirav Malani; Jason Fernandes; Iván D'Orso; Gerard Cagney; Tracy L Diamond; Honglin Zhou; Daria J Hazuda; Amy S Espeseth; Renate König; Sourav Bandyopadhyay; Trey Ideker; Stephen P Goff; Nevan J Krogan; Alan D Frankel; John A T Young; Sumit K Chanda
Journal:  PLoS Pathog       Date:  2009-05-29       Impact factor: 6.823

10.  Haploid genetic screens in human cells identify host factors used by pathogens.

Authors:  Jan E Carette; Carla P Guimaraes; Malini Varadarajan; Annie S Park; Irene Wuethrich; Alzbeta Godarova; Maciej Kotecki; Brent H Cochran; Eric Spooner; Hidde L Ploegh; Thijn R Brummelkamp
Journal:  Science       Date:  2009-11-27       Impact factor: 63.714
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  3 in total

Review 1.  New-generation screening assays for the detection of anti-influenza compounds targeting viral and host functions.

Authors:  Grant Beyleveld; Kris M White; Juan Ayllon; Megan L Shaw
Journal:  Antiviral Res       Date:  2013-08-06       Impact factor: 5.970

2.  Inhibitory and combinatorial effect of diphyllin, a v-ATPase blocker, on influenza viruses.

Authors:  Hui-Wen Chen; Jenna Xiao Cheng; Ming-Tsan Liu; Kevin King; Ju-Yi Peng; Xin-Quan Zhang; Ching-Ho Wang; Sujan Shresta; Robert T Schooley; Yu-Tsueng Liu
Journal:  Antiviral Res       Date:  2013-06-29       Impact factor: 5.970

Review 3.  Functional Genomic Strategies for Elucidating Human-Virus Interactions: Will CRISPR Knockout RNAi and Haploid Cells?

Authors:  Jill M Perreira; Paul Meraner; Abraham L Brass
Journal:  Adv Virus Res       Date:  2016-03-02       Impact factor: 9.937
  3 in total

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