Literature DB >> 21202563

Benzyl 3-[(E,E)-3-phenyl-prop-2-enyl-idene]dithio-carbazate.

M T H Tarafder, K A Crouse, M Toihidul Islam, Suchada Chantrapromma, Hoong-Kun Fun.   

Abstract

The title compound, C(17)H(16)N(2)S(2), a dithio-carbazate derivative, adopts an EE configuration with respect to the C=C and C=N double bonds of the n class="Chemical">propenyl-idine group. The 3-phenyl-prop-2-enyl-idene and dithio-carbazate fragments lie essentially in the same plane, with a maximum deviation from that plane of 0.074 (2) Å, while the dihedral angle between the 3-phenyl-prop-2-enyl-idene and the benzyl group is 77.78 (7)°. In the crystal structure, mol-ecules are linked by an N-H⋯S hydrogen bond and a weak C-H⋯S inter-action involving the terminal thione S atom, forming dimers that are arranged into sheets parallel to the bc plane. The crystal structure is also stabilized by C-H⋯π inter-actions.

Entities:  

Year:  2008        PMID: 21202563      PMCID: PMC2961473          DOI: 10.1107/S1600536808013354

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For information on values of bond lengths, see Allen et al. (1987 ▶). For related structures of dithio­carbazate derivatives, see, for example: Crouse et al. (2004 ▶); Fun et al. (2008 ▶); Shanmuga Sundara Raj et al. (2000 ▶). For applications and bioactivities of dithio­carbazate derivatives, see, for example: Ali & Tarafder (1977 ▶); Ali et al. (2001 ▶, 2002 ▶, 2008 ▶); Chan et al. (2008 ▶); Chew et al. (2004 ▶); Crouse et al. (2004 ▶); Tarafder et al. (1978 ▶, 1981 ▶, 2001 ▶, 2008 ▶).

Experimental

Crystal data

C17H16N2S2 M = 312.44 Triclinic, a = 5.4350 (3) Å b = 11.6333 (7) Å c = 13.6289 (8) Å α = 66.869 (4)° β = 82.723 (4)° γ = 87.520 (4)° V = 786.04 (8) Å3 Z = 2 Mo Kα radiation μ = 0.33 mm−1 T = 100.0 (1) K 0.58 × 0.19 × 0.05 mm

Data collection

Bruker SMART APEX2 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.829, T max = 0.982 16100 measured reflections 3570 independent reflections 2870 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.092 S = 1.07 3570 reflections 194 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808013354/sj2494sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808013354/sj2494Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H16N2S2Z = 2
Mr = 312.44F000 = 328
Triclinic, P1Dx = 1.320 Mg m3
Hall symbol: -P 1Melting point: 454 K
a = 5.4350 (3) ÅMo Kα radiation λ = 0.71073 Å
b = 11.6333 (7) ÅCell parameters from 3570 reflections
c = 13.6289 (8) Åθ = 1.9–27.5º
α = 66.869 (4)ºµ = 0.33 mm1
β = 82.723 (4)ºT = 100.0 (1) K
γ = 87.520 (4)ºNeedle, yellow
V = 786.04 (8) Å30.58 × 0.19 × 0.05 mm
Bruker SMART APEX2 CCD area-detector diffractometer3570 independent reflections
Radiation source: fine-focus sealed tube2870 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.044
Detector resolution: 8.33 pixels mm-1θmax = 27.5º
T = 100.0(1) Kθmin = 1.9º
ω scansh = −7→7
Absorption correction: multi-scan(SADABS; Bruker, 2005)k = −14→15
Tmin = 0.829, Tmax = 0.982l = −17→17
16100 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.093  w = 1/[σ2(Fo2) + (0.0368P)2 + 0.3179P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
3570 reflectionsΔρmax = 0.29 e Å3
194 parametersΔρmin = −0.27 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.13630 (8)0.74106 (4)0.65560 (3)0.02137 (13)
S2−0.23454 (8)0.66804 (4)0.47403 (4)0.02329 (13)
N10.1010 (3)0.56987 (15)0.60587 (12)0.0209 (3)
N20.2180 (3)0.55500 (14)0.69440 (11)0.0212 (3)
C1−0.2508 (3)1.02812 (17)0.63242 (14)0.0241 (4)
H1A−0.11331.04040.58120.029*
C2−0.2838 (3)1.10363 (18)0.68983 (15)0.0270 (4)
H2A−0.16901.16640.67710.032*
C3−0.4872 (3)1.08611 (18)0.76620 (15)0.0265 (4)
H3A−0.50871.13640.80540.032*
C4−0.6584 (3)0.99380 (18)0.78414 (15)0.0261 (4)
H4A−0.79640.98240.83500.031*
C5−0.6253 (3)0.91803 (17)0.72668 (15)0.0230 (4)
H5A−0.74130.85580.73930.028*
C6−0.4207 (3)0.93393 (16)0.65043 (14)0.0203 (4)
C7−0.3781 (3)0.84724 (17)0.59218 (14)0.0222 (4)
H7A−0.32500.89380.51640.027*
H7B−0.52870.80140.59930.027*
C8−0.0802 (3)0.65301 (16)0.57678 (14)0.0199 (4)
C90.3953 (3)0.47537 (16)0.71089 (14)0.0205 (4)
H9A0.43710.43690.66280.025*
C100.5303 (3)0.44442 (16)0.80163 (14)0.0207 (4)
H10A0.48960.48290.84970.025*
C110.7138 (3)0.36108 (16)0.81818 (14)0.0209 (4)
H11A0.75060.32770.76620.025*
C120.8636 (3)0.31572 (16)0.90742 (14)0.0202 (4)
C130.8492 (3)0.36609 (17)0.98578 (15)0.0254 (4)
H13A0.73750.42980.98300.030*
C140.9991 (4)0.32206 (18)1.06702 (15)0.0285 (4)
H14A0.98890.35701.11820.034*
C151.1645 (4)0.22635 (19)1.07320 (15)0.0298 (4)
H15A1.26540.19721.12820.036*
C161.1791 (3)0.17447 (19)0.99739 (15)0.0306 (5)
H16A1.28900.10961.00160.037*
C171.0301 (3)0.21890 (18)0.91488 (15)0.0257 (4)
H17A1.04150.18360.86390.031*
H1N10.129 (4)0.519 (2)0.5733 (18)0.038 (6)*
U11U22U33U12U13U23
S10.0237 (2)0.0250 (2)0.0198 (2)0.00424 (18)−0.00880 (17)−0.01190 (19)
S20.0242 (2)0.0305 (3)0.0194 (2)0.00284 (19)−0.00832 (17)−0.0129 (2)
N10.0221 (8)0.0265 (8)0.0190 (8)0.0024 (6)−0.0071 (6)−0.0128 (7)
N20.0218 (8)0.0265 (8)0.0165 (7)−0.0001 (6)−0.0052 (6)−0.0090 (6)
C10.0193 (9)0.0296 (10)0.0230 (9)0.0001 (8)0.0002 (7)−0.0106 (8)
C20.0238 (10)0.0256 (10)0.0316 (11)−0.0046 (8)−0.0010 (8)−0.0114 (9)
C30.0255 (10)0.0279 (10)0.0311 (10)0.0026 (8)−0.0030 (8)−0.0172 (9)
C40.0193 (9)0.0321 (11)0.0279 (10)−0.0005 (8)0.0007 (7)−0.0136 (9)
C50.0182 (9)0.0250 (10)0.0260 (10)−0.0033 (7)−0.0041 (7)−0.0094 (8)
C60.0189 (9)0.0223 (9)0.0195 (9)0.0031 (7)−0.0076 (7)−0.0067 (7)
C70.0212 (9)0.0258 (10)0.0211 (9)0.0027 (7)−0.0081 (7)−0.0095 (8)
C80.0197 (9)0.0225 (9)0.0174 (9)−0.0025 (7)−0.0018 (7)−0.0076 (7)
C90.0199 (9)0.0229 (9)0.0212 (9)−0.0018 (7)−0.0027 (7)−0.0109 (8)
C100.0230 (9)0.0233 (9)0.0185 (9)−0.0023 (7)−0.0039 (7)−0.0102 (7)
C110.0226 (9)0.0217 (9)0.0207 (9)−0.0029 (7)−0.0034 (7)−0.0103 (7)
C120.0179 (9)0.0206 (9)0.0209 (9)−0.0033 (7)−0.0032 (7)−0.0063 (7)
C130.0279 (10)0.0239 (10)0.0245 (10)0.0001 (8)−0.0067 (8)−0.0085 (8)
C140.0361 (11)0.0285 (10)0.0214 (10)−0.0048 (8)−0.0084 (8)−0.0083 (8)
C150.0236 (10)0.0373 (11)0.0217 (10)−0.0033 (8)−0.0074 (8)−0.0025 (9)
C160.0227 (10)0.0351 (11)0.0276 (10)0.0061 (8)−0.0033 (8)−0.0058 (9)
C170.0243 (10)0.0293 (10)0.0229 (10)0.0024 (8)−0.0017 (7)−0.0100 (8)
S1—C81.7466 (17)C7—H7A0.9700
S1—C71.8187 (17)C7—H7B0.9700
S2—C81.6696 (18)C9—C101.433 (2)
N1—C81.334 (2)C9—H9A0.9300
N1—N21.382 (2)C10—C111.337 (2)
N1—H1N10.87 (2)C10—H10A0.9300
N2—C91.285 (2)C11—C121.460 (2)
C1—C21.381 (3)C11—H11A0.9300
C1—C61.390 (3)C12—C171.394 (2)
C1—H1A0.9300C12—C131.399 (3)
C2—C31.381 (3)C13—C141.378 (3)
C2—H2A0.9300C13—H13A0.9300
C3—C41.379 (3)C14—C151.384 (3)
C3—H3A0.9300C14—H14A0.9300
C4—C51.384 (3)C15—C161.380 (3)
C4—H4A0.9300C15—H15A0.9300
C5—C61.387 (2)C16—C171.387 (3)
C5—H5A0.9300C16—H16A0.9300
C6—C71.504 (2)C17—H17A0.9300
C8—S1—C7102.56 (8)N1—C8—S1113.76 (13)
C8—N1—N2120.49 (15)S2—C8—S1124.67 (10)
C8—N1—H1N1118.0 (15)N2—C9—C10121.56 (16)
N2—N1—H1N1120.9 (15)N2—C9—H9A119.2
C9—N2—N1114.00 (14)C10—C9—H9A119.2
C2—C1—C6120.70 (17)C11—C10—C9121.02 (16)
C2—C1—H1A119.6C11—C10—H10A119.5
C6—C1—H1A119.6C9—C10—H10A119.5
C1—C2—C3120.11 (18)C10—C11—C12128.25 (16)
C1—C2—H2A119.9C10—C11—H11A115.9
C3—C2—H2A119.9C12—C11—H11A115.9
C4—C3—C2119.76 (17)C17—C12—C13118.27 (16)
C4—C3—H3A120.1C17—C12—C11118.96 (16)
C2—C3—H3A120.1C13—C12—C11122.77 (16)
C3—C4—C5120.16 (17)C14—C13—C12120.56 (17)
C3—C4—H4A119.9C14—C13—H13A119.7
C5—C4—H4A119.9C12—C13—H13A119.7
C4—C5—C6120.65 (17)C13—C14—C15120.60 (18)
C4—C5—H5A119.7C13—C14—H14A119.7
C6—C5—H5A119.7C15—C14—H14A119.7
C5—C6—C1118.61 (16)C16—C15—C14119.64 (17)
C5—C6—C7120.57 (17)C16—C15—H15A120.2
C1—C6—C7120.76 (16)C14—C15—H15A120.2
C6—C7—S1105.49 (12)C15—C16—C17120.11 (18)
C6—C7—H7A110.6C15—C16—H16A119.9
S1—C7—H7A110.6C17—C16—H16A119.9
C6—C7—H7B110.6C16—C17—C12120.81 (18)
S1—C7—H7B110.6C16—C17—H17A119.6
H7A—C7—H7B108.8C12—C17—H17A119.6
N1—C8—S2121.57 (13)
C8—N1—N2—C9−177.45 (16)C7—S1—C8—S2−2.52 (14)
C6—C1—C2—C30.1 (3)N1—N2—C9—C10−177.41 (16)
C1—C2—C3—C4−0.6 (3)N2—C9—C10—C11179.74 (17)
C2—C3—C4—C50.7 (3)C9—C10—C11—C12−177.74 (17)
C3—C4—C5—C6−0.1 (3)C10—C11—C12—C17173.65 (18)
C4—C5—C6—C1−0.5 (3)C10—C11—C12—C13−6.9 (3)
C4—C5—C6—C7176.79 (16)C17—C12—C13—C141.0 (3)
C2—C1—C6—C50.5 (3)C11—C12—C13—C14−178.40 (17)
C2—C1—C6—C7−176.74 (17)C12—C13—C14—C15−0.7 (3)
C5—C6—C7—S1−102.64 (16)C13—C14—C15—C16−0.1 (3)
C1—C6—C7—S174.54 (18)C14—C15—C16—C170.6 (3)
C8—S1—C7—C6−175.27 (12)C15—C16—C17—C12−0.2 (3)
N2—N1—C8—S2−176.88 (13)C13—C12—C17—C16−0.6 (3)
N2—N1—C8—S13.0 (2)C11—C12—C17—C16178.89 (17)
C7—S1—C8—N1177.58 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···S2i0.87 (2)2.53 (2)3.3714 (19)165 (2)
C9—H9A···S2i0.932.933.7264 (18)144
C15—H15A···Cg1ii0.932.833.649 (2)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯S2i0.87 (2)2.53 (2)3.3714 (19)165 (2)
C9—H9A⋯S2i0.932.933.7264 (18)144
C15—H15ACg1ii0.932.833.649 (2)148

Symmetry codes: (i) ; (ii) . Cg1 is the centroid of the C1–C6 phenyl ring.

  5 in total

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Authors: 
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4.  Bis[benzyl N'-(3-phenyl-prop-2-enyl-idene)hydrazinecarbodithio-ato-κN',S]zinc(II).

Authors:  Hoong-Kun Fun; Suchada Chantrapromma; M T H Tarafder; M Toihidul Islam; C M Zakaria; M A A A A Islam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-05

5.  Bis[benzyl N'-(3-phenyl-prop-2-enyl-idene)hydrazinecarbodithio-ato-κN',S]copper(II).

Authors:  M T H Tarafder; M Toihidul Islam; M A A A A Islam; Suchada Chantrapromma; Hoong-Kun Fun
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  5 in total
  9 in total

1.  Benzyl 3-(10-oxo-9,10-dihydrophenanthren-9-ylidene)dithiocarbazate.

Authors:  Qiao-Ru Liu; Song-Mao Chu; Gan-Qing Zhao; Li-Hua Chen; Yong-Jun Han
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

2.  Methyl 3-[(E,E)-3-phenyl-prop-2-enyl-idene]dithio-carbazate.

Authors:  M T H Tarafder; Sultana Shakila Khan; M A A A A Islam; Lea Lorenzi; Ennio Zangrando
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-20

3.  Bis[benzyl N'-(3-phenyl-prop-2-enyl-idene)dithio-carbazato-κ(2)N',S]mercury(II).

Authors:  M A A A A Islam; M S Reza; M T H Tarafder; M C Sheikh; E Zangrando
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16

4.  Bis[benzyl 3-(3-phenyl-prop-2-enyl-idene)dithio-carbazato-κ(2)N(3),S]cadmium.

Authors:  M S Reza; M A A A A Islam; M T H Tarafder; M C Sheikh; E Zangrando
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30

5.  Crystal structure of S-hexyl (E)-3-(4-methyl-benzyl-idene)di-thio-carbazate.

Authors:  M B H Howlader; M S Begum; M C Sheikh; R Miyatake; E Zangrando
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-10

6.  Crystal structure of benzyl N'-[(1E,4E)-1,5-bis-(4-meth-oxy-phen-yl)penta-1,4-dien-3-yl-idene]hydrazine-1-carbodi-thio-ate.

Authors:  Nabeel Arif Tawfeeq; Huey Chong Kwong; Mohamed Ibrahim Mohamed Tahir; Thahira B S A Ravoof
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-10-03

7.  (Pyridin-4-yl)methyl N'-(3-phenyl-allyl-idene)hydrazinecarbodithio-ate.

Authors:  May Lee Low; Thahira Begum S A Ravoof; Mohamed Ibrahim Mohamed Tahir; Karen A Crouse; Edward R T Tiekink
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8.  Crystal structure of 1,2-bis-((benzyl-sulfan-yl){2-[1-(2-hy-droxy-phen-yl)ethyl-idene]hydrazin-1-yl-idene}meth-yl)disulfane.

Authors:  M A A A A Islam; M C Sheikh; M H Islam; R Miyatake; E Zangrando
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-02-17

9.  A cinnamaldehyde Schiff base of S-(4-methyl-benz-yl) di-thio-carbazate: crystal structure, Hirshfeld surface analysis and computational study.

Authors:  Enis Nadia Md Yusof; Mohamed I M Tahir; Thahira B S A Ravoof; Sang Loon Tan; Edward R T Tiekink
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  9 in total

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