Literature DB >> 21201987

Bis[benzyl N'-(3-phenyl-prop-2-enyl-idene)hydrazinecarbodithio-ato-κN',S]zinc(II).

Hoong-Kun Fun, Suchada Chantrapromma, M T H Tarafder, M Toihidul Islam, C M Zakaria, M A A A A Islam.   

Abstract

In the title Zn(II) complex, [Zn(C(17)H(15)N(2)S(2))(2)], the Zn(II) atom lies on a twofold rotation axis. It exists in a tetra-hedral geometry, chelated by two deprotonated Schiff base ligands. The dihedral angle between each ligand is 71.48 (8)°. Mol-ecules are connected by weak C-H⋯S inter-molecular inter-actions into chains along the c axis. The crystal structure is further stabilized by C-H⋯π inter-actions involving the phenyl ring of the 3-phenyl-prop-2-enyl-idene unit.

Entities:  

Year:  2008        PMID: 21201987      PMCID: PMC2961027          DOI: 10.1107/S1600536808005643

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and structure of S-benzyl­dithio­carbaza­tes, see: Ali & Tarafder (1977 ▶); Shanmuga Sundara Raj et al. (2000 ▶). For the structures of ZnII complexes, see: Latheef et al. (2007 ▶); Tarafder, Chew et al. (2002 ▶). For the structures of other metal dithio­carbaza­tes, see: Ali et al. (2001 ▶, 2002 ▶, 2008 ▶); Chew et al. (2004 ▶); Crouse et al. (2004 ▶); Tarafder et al. (2001 ▶, 2008 ▶); Tarafder, Chew et al. (2002 ▶); Tarafder, Jin et al. (2002 ▶). For the bioactivity of metal S-benzyl­dithio­carbaza­tes, see, for example: Ali et al. (2001 ▶, 2002 ▶); Tarafder et al. (2001 ▶); Tarafder, Jin et al. (2002 ▶).

Experimental

Crystal data

[Zn(C17H15N2S2)2] M = 688.23 Orthorhombic, a = 36.0897 (4) Å b = 9.9310 (1) Å c = 8.7633 (1) Å V = 3140.83 (6) Å3 Z = 4 Mo Kα radiation μ = 1.08 mm−1 T = 100.0 (1) K 0.37 × 0.25 × 0.17 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.692, T max = 0.841 82655 measured reflections 4580 independent reflections 4071 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.091 S = 1.15 4580 reflections 195 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808005643/ng2427sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808005643/ng2427Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C17H15N2S2)2]Dx = 1.455 Mg m3
Mr = 688.23Melting point = 457–458 K
Orthorhombic, PbcnMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 4580 reflections
a = 36.0897 (4) Åθ = 1.1–30.0º
b = 9.9310 (1) ŵ = 1.08 mm1
c = 8.7633 (1) ÅT = 100.0 (1) K
V = 3140.83 (6) Å3Block, yellow
Z = 40.37 × 0.25 × 0.17 mm
F000 = 1424
Bruker SMART APEXII CCD area-detector diffractometer4580 independent reflections
Radiation source: fine-focus sealed tube4071 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.042
Detector resolution: 8.33 pixels mm-1θmax = 30.0º
T = 100.0(1) Kθmin = 1.1º
ω scansh = −50→50
Absorption correction: multi-scan(SADABS; Bruker, 2005)k = −13→13
Tmin = 0.692, Tmax = 0.841l = −12→12
82655 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.091  w = 1/[σ2(Fo2) + (0.0478P)2 + 1.4067P] where P = (Fo2 + 2Fc2)/3
S = 1.15(Δ/σ)max = 0.001
4580 reflectionsΔρmax = 0.49 e Å3
195 parametersΔρmin = −0.32 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temparture data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.00000.42216 (2)0.25000.01855 (8)
S1−0.056843 (10)0.51031 (4)0.20596 (5)0.02295 (9)
S2−0.126368 (10)0.40453 (4)0.31408 (5)0.02541 (10)
N1−0.02538 (3)0.29452 (12)0.40410 (14)0.0177 (2)
N2−0.06402 (3)0.29289 (12)0.40147 (14)0.0183 (2)
C10.10940 (4)0.21479 (15)0.60174 (17)0.0215 (3)
H1A0.10070.28540.54200.026*
C20.14657 (4)0.20851 (16)0.63939 (18)0.0238 (3)
H2B0.16270.27450.60400.029*
C30.16001 (4)0.10408 (18)0.72987 (18)0.0251 (3)
H3A0.18510.09990.75410.030*
C40.13595 (4)0.00646 (18)0.78363 (19)0.0263 (3)
H4A0.1448−0.06270.84510.032*
C50.09847 (4)0.01154 (17)0.74589 (18)0.0233 (3)
H5A0.0824−0.05430.78250.028*
C60.08479 (4)0.11508 (15)0.65326 (16)0.0191 (3)
C70.04530 (4)0.11779 (15)0.61642 (17)0.0197 (3)
H7A0.03040.05340.66270.024*
C80.02865 (4)0.20541 (15)0.52127 (17)0.0203 (3)
H8A0.04340.26600.46760.024*
C9−0.01069 (4)0.20968 (15)0.49886 (16)0.0194 (3)
H9A−0.02580.15090.55300.023*
C10−0.07830 (4)0.38814 (15)0.31855 (16)0.0188 (3)
C11−0.14245 (4)0.29477 (17)0.46680 (18)0.0239 (3)
H11A−0.13820.20110.44070.029*
H11B−0.12950.31460.56110.029*
C12−0.18343 (4)0.32244 (15)0.48382 (17)0.0216 (3)
C13−0.19570 (4)0.42883 (18)0.5729 (2)0.0300 (3)
H13A−0.17850.48310.62260.036*
C14−0.23315 (5)0.4555 (2)0.5890 (2)0.0327 (4)
H14A−0.24100.52650.65030.039*
C15−0.25893 (4)0.37653 (18)0.51415 (19)0.0281 (3)
H15A−0.28410.39420.52490.034*
C16−0.24710 (4)0.27147 (19)0.4234 (2)0.0316 (4)
H16A−0.26440.21870.37220.038*
C17−0.20951 (4)0.24407 (17)0.4082 (2)0.0281 (3)
H17A−0.20180.17290.34700.034*
U11U22U33U12U13U23
Zn10.01629 (12)0.02017 (13)0.01920 (13)0.0000.00389 (8)0.000
S10.02122 (17)0.02294 (18)0.02470 (18)0.00512 (13)0.00525 (14)0.00599 (14)
S20.01511 (16)0.0341 (2)0.02701 (19)0.00377 (14)−0.00046 (13)0.00913 (15)
N10.0135 (5)0.0205 (5)0.0191 (5)0.0002 (4)0.0008 (4)−0.0007 (4)
N20.0131 (5)0.0227 (6)0.0191 (5)−0.0007 (4)−0.0003 (4)0.0002 (5)
C10.0198 (6)0.0222 (7)0.0226 (7)0.0018 (5)−0.0006 (5)0.0003 (5)
C20.0176 (6)0.0265 (7)0.0272 (7)−0.0010 (5)0.0016 (5)−0.0024 (6)
C30.0168 (6)0.0325 (8)0.0260 (7)0.0047 (6)−0.0026 (5)−0.0048 (6)
C40.0240 (7)0.0294 (8)0.0255 (7)0.0061 (6)−0.0039 (6)0.0025 (6)
C50.0214 (7)0.0241 (7)0.0243 (7)0.0016 (6)−0.0001 (5)0.0029 (6)
C60.0166 (6)0.0224 (6)0.0184 (6)0.0019 (5)−0.0006 (5)−0.0011 (5)
C70.0163 (6)0.0228 (7)0.0199 (6)−0.0003 (5)0.0008 (5)−0.0003 (5)
C80.0155 (6)0.0235 (7)0.0219 (6)−0.0004 (5)0.0011 (5)0.0008 (5)
C90.0164 (6)0.0226 (7)0.0192 (6)−0.0007 (5)0.0009 (5)0.0008 (5)
C100.0156 (6)0.0227 (7)0.0182 (6)0.0008 (5)0.0010 (5)−0.0008 (5)
C110.0151 (6)0.0301 (8)0.0266 (7)0.0006 (5)−0.0003 (5)0.0060 (6)
C120.0148 (6)0.0268 (7)0.0230 (7)0.0001 (5)−0.0011 (5)0.0044 (6)
C130.0212 (7)0.0377 (9)0.0311 (8)−0.0008 (6)−0.0057 (6)−0.0092 (7)
C140.0235 (8)0.0425 (10)0.0322 (8)0.0068 (7)−0.0010 (6)−0.0106 (8)
C150.0153 (6)0.0392 (9)0.0297 (8)0.0025 (6)0.0009 (6)0.0018 (7)
C160.0172 (7)0.0347 (9)0.0428 (10)−0.0042 (6)−0.0036 (6)−0.0053 (7)
C170.0189 (7)0.0273 (8)0.0380 (9)−0.0004 (6)−0.0015 (6)−0.0070 (7)
Zn1—N12.0662 (12)C6—C71.4616 (19)
Zn1—N1i2.0662 (12)C7—C81.347 (2)
Zn1—S1i2.2634 (4)C7—H7A0.9300
Zn1—S12.2636 (4)C8—C91.4337 (19)
S1—C101.7450 (15)C8—H8A0.9300
S2—C101.7428 (14)C9—H9A0.9300
S2—C111.8210 (16)C11—C121.5118 (19)
N1—C91.2964 (18)C11—H11A0.9700
N1—N21.3948 (15)C11—H11B0.9700
N2—C101.2994 (19)C12—C131.386 (2)
C1—C21.383 (2)C12—C171.390 (2)
C1—C61.405 (2)C13—C141.384 (2)
C1—H1A0.9300C13—H13A0.9300
C2—C31.393 (2)C14—C151.382 (2)
C2—H2B0.9300C14—H14A0.9300
C3—C41.384 (2)C15—C161.379 (2)
C3—H3A0.9300C15—H15A0.9300
C4—C51.393 (2)C16—C171.390 (2)
C4—H4A0.9300C16—H16A0.9300
C5—C61.400 (2)C17—H17A0.9300
C5—H5A0.9300
N1—Zn1—N1i104.32 (7)C7—C8—C9123.08 (13)
N1—Zn1—S1i121.84 (3)C7—C8—H8A118.5
N1i—Zn1—S1i86.96 (3)C9—C8—H8A118.5
N1—Zn1—S186.96 (3)N1—C9—C8120.80 (13)
N1i—Zn1—S1121.84 (3)N1—C9—H9A119.6
S1i—Zn1—S1134.50 (2)C8—C9—H9A119.6
C10—S1—Zn192.11 (5)N2—C10—S2118.39 (11)
C10—S2—C11104.17 (7)N2—C10—S1130.26 (11)
C9—N1—N2114.33 (12)S2—C10—S1111.35 (8)
C9—N1—Zn1129.50 (10)C12—C11—S2105.99 (10)
N2—N1—Zn1116.07 (9)C12—C11—H11A110.5
C10—N2—N1113.42 (12)S2—C11—H11A110.5
C2—C1—C6120.33 (14)C12—C11—H11B110.5
C2—C1—H1A119.8S2—C11—H11B110.5
C6—C1—H1A119.8H11A—C11—H11B108.7
C1—C2—C3120.48 (14)C13—C12—C17118.62 (14)
C1—C2—H2B119.8C13—C12—C11120.44 (14)
C3—C2—H2B119.8C17—C12—C11120.92 (14)
C4—C3—C2119.80 (14)C14—C13—C12121.01 (15)
C4—C3—H3A120.1C14—C13—H13A119.5
C2—C3—H3A120.1C12—C13—H13A119.5
C3—C4—C5120.19 (15)C15—C14—C13120.01 (16)
C3—C4—H4A119.9C15—C14—H14A120.0
C5—C4—H4A119.9C13—C14—H14A120.0
C4—C5—C6120.44 (15)C16—C15—C14119.63 (15)
C4—C5—H5A119.8C16—C15—H15A120.2
C6—C5—H5A119.8C14—C15—H15A120.2
C5—C6—C1118.75 (13)C15—C16—C17120.35 (15)
C5—C6—C7119.05 (13)C15—C16—H16A119.8
C1—C6—C7122.18 (13)C17—C16—H16A119.8
C8—C7—C6125.72 (14)C12—C17—C16120.37 (15)
C8—C7—H7A117.1C12—C17—H17A119.8
C6—C7—H7A117.1C16—C17—H17A119.8
N1—Zn1—S1—C10−6.84 (6)C6—C7—C8—C9−174.96 (14)
N1i—Zn1—S1—C1098.14 (6)N2—N1—C9—C8−176.13 (12)
S1i—Zn1—S1—C10−140.35 (5)Zn1—N1—C9—C87.7 (2)
N1i—Zn1—N1—C964.77 (12)C7—C8—C9—N1−178.89 (14)
S1i—Zn1—N1—C9−30.62 (14)N1—N2—C10—S2−176.19 (9)
S1—Zn1—N1—C9−173.11 (13)N1—N2—C10—S13.1 (2)
N1i—Zn1—N1—N2−111.33 (10)C11—S2—C10—N211.23 (14)
S1i—Zn1—N1—N2153.28 (8)C11—S2—C10—S1−168.22 (8)
S1—Zn1—N1—N210.79 (9)Zn1—S1—C10—N24.50 (14)
C9—N1—N2—C10172.96 (13)Zn1—S1—C10—S2−176.13 (7)
Zn1—N1—N2—C10−10.34 (15)C10—S2—C11—C12171.23 (11)
C6—C1—C2—C3−0.6 (2)S2—C11—C12—C13−84.45 (16)
C1—C2—C3—C4−0.6 (2)S2—C11—C12—C1794.11 (16)
C2—C3—C4—C50.8 (2)C17—C12—C13—C141.2 (3)
C3—C4—C5—C60.1 (2)C11—C12—C13—C14179.80 (16)
C4—C5—C6—C1−1.2 (2)C12—C13—C14—C15−0.8 (3)
C4—C5—C6—C7−179.72 (14)C13—C14—C15—C16−0.1 (3)
C2—C1—C6—C51.4 (2)C14—C15—C16—C170.6 (3)
C2—C1—C6—C7179.91 (14)C13—C12—C17—C16−0.7 (3)
C5—C6—C7—C8−175.41 (15)C11—C12—C17—C16−179.28 (16)
C1—C6—C7—C86.1 (2)C15—C16—C17—C12−0.2 (3)
D—H···AD—HH···AD···AD—H···A
C13—H13A···S2ii0.932.763.6697 (17)167
C11—H11B···Cg1iii0.972.983.5785 (17)121
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13A⋯S2i0.932.763.6697 (17)167
C11—H11BCg1ii0.972.983.5785 (17)121

Symmetry codes: (i) ; (ii) .

  4 in total

1.  trans-cis S-benzyl dithiocarbazate

Authors: 
Journal:  Acta Crystallogr C       Date:  2000-10       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Biological activity of palladium(II) and platinum(II) complexes of the acetone Schiff bases of S-methyl- and S-benzyldithiocarbazate and the X-ray crystal structure of the [Pd(asme)2] (asme=anionic form of the acetone Schiff base of S-methyldithiocarbazate) complex.

Authors:  Mohammad Akbar Ali; Aminul Huq Mirza; Raymond J Butcher; M T H Tarafder; Tan Boon Keat; A Manaf Ali
Journal:  J Inorg Biochem       Date:  2002-11-25       Impact factor: 4.155

4.  Bis[benzyl N'-(3-phenyl-prop-2-enyl-idene)hydrazinecarbodithio-ato-κN',S]copper(II).

Authors:  M T H Tarafder; M Toihidul Islam; M A A A A Islam; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-25
  4 in total
  3 in total

1.  Benzyl 3-[(E,E)-3-phenyl-prop-2-enyl-idene]dithio-carbazate.

Authors:  M T H Tarafder; K A Crouse; M Toihidul Islam; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-10

2.  Bis[benzyl N'-(3-phenyl-prop-2-enyl-idene)dithio-carbazato-κ(2)N',S]mercury(II).

Authors:  M A A A A Islam; M S Reza; M T H Tarafder; M C Sheikh; E Zangrando
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16

3.  Bis[benzyl 3-(3-phenyl-prop-2-enyl-idene)dithio-carbazato-κ(2)N(3),S]cadmium.

Authors:  M S Reza; M A A A A Islam; M T H Tarafder; M C Sheikh; E Zangrando
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.