| Literature DB >> 28435717 |
Enis Nadia Md Yusof1, Mohamed I M Tahir1, Thahira B S A Ravoof1, Sang Loon Tan2, Edward R T Tiekink2.
Abstract
The title di-thio-carbazate ester (I),Entities:
Keywords: DFT; Hirshfeld surface analysis; crystal structure; dithiocarbazate ester; hydrogen bonding
Year: 2017 PMID: 28435717 PMCID: PMC5382618 DOI: 10.1107/S2056989017003991
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level.
Figure 2Molecular packing in (I): (a) a view of the supramolecular dimer sustained by N—H⋯S(thione) hydrogen bonds and (b) a view of the unit-cell contents shown in projection down the a axis. The N—H⋯S and C—H⋯π interactions are shown as orange and purple dashed lines, respectively.
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the (C5–C10) and (C12—C17) rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.87 (2) | 2.57 (2) | 3.3984 (17) | 158 (2) |
| C14—H14⋯ | 0.95 | 2.95 | 3.6749 (19) | 134 |
| C8—H8⋯ | 0.95 | 2.75 | 3.5571 (19) | 143 |
| C11—H11 | 0.99 | 2.78 | 3.5110 (18) | 131 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 3Relative percentage contributions of close contacts to the Hirshfeld surfaces of (I) and (II).
Figure 4Fingerprint plots for (I) and (II): (a) overall and those delineated into (b) H⋯H, (c) C⋯H/H⋯C, (d) S⋯H/H⋯S and (e) N⋯H/H⋯N contacts. Note that the Hirshfeld surface showing H⋯H contacts for (I) and (II) are illustrated in the reverse orientation so as to show the close contacts.
Comparison of some physical properties between (I) and (II)
| Property | (I) | (II) |
|---|---|---|
| Volume, | 416.41 | 384.29 |
| Surface area, | 399.66 | 372.94 |
|
| 0.96 | 0.97 |
| Density, | 1.274 | 1.320 |
| Kitaigorodskii Packing Index, KPI (%) | 67.5 | 68.5 |
| Globularity, | 0.675 | 0.685 |
| Asphericity, | 0.326 | 0.359 |
Selected geometric parameters (Å, °) in (I) and (II) and in geometry-optimized-(I) and -(II)
| Parameter | (I) | (II) | optimized-(I) | optimized-(II) |
|---|---|---|---|---|
| C1—S1 | 1.6752 (16) | 1.670 (2) | 1.665 | 1.665 |
| C1—S2 | 1.7455 (16) | 1.747 (2) | 1.769 | 1.771 |
| C11—S2 | 1.8233 (16) | 1.8189 (17) | 1.850 | 1.850 |
| C1—N1 | 1.334 (2) | 1.333 (2) | 1.365 | 1.365 |
| N1—N2 | 1.3845 (18) | 1.382 (2) | 1.354 | 1.353 |
| C2—N2 | 1.284 (2) | 1.285 (2) | 1.288 | 1.290 |
| C2—C3 | 1.435 (2) | 1.433 (3) | 1.439 | 1.439 |
| C3—C4 | 1.339 (2) | 1.337 (2) | 1.350 | 1.350 |
| C1—S2—C11 | 103.44 (7) | 102.59 (9) | 101.5 | 101.4 |
| C1—N1—N2 | 120.95 (13) | 120.48 (15) | 122.8 | 122.8 |
| N1—N2—C2 | 114.17 (13) | 114.00 (15) | 117.2 | 117.2 |
| S1—C1—S2 | 125.20 (10) | 124.67 (11) | 127.0 | 127.0 |
| S1—C1—N1 | 121.06 (12) | 121.57 (13) | 119.8 | 119.9 |
| S2—C1—N1 | 113.74 (11) | 113.77 (14) | 113.2 | 113.1 |
| C2—C3—C4 | 121.28 (15) | 121.03 (16) | 122.6 | 122.6 |
| C3—C4—C5 | 127.33 (16) | 128.25 (16) | 127.5 | 127.5 |
| S2—C11—C12—C13 | 106.09 (15) | −102.67 (18) | 91.2 | 89.7 |
| S2—C11—C12—C17 | −71.41 (17) | 74.56 (19) | −88.8 | −90.3 |
| C3—C4—C5—C6 | −0.2 (3) | −7.0 (3) | −2.0 | 1.3 |
| C3—C4—C5—C10 | 178.69 (16) | 173.64 (19) | 178.0 | −178.8 |
Figure 5Structural overlay between the crystal and optimized structures of (I) (red image), (Io) (green), (II) blue) and (IIo) (purple).
Experimental details
| Crystal data | |
| Chemical formula | C18H18N2S2 |
|
| 326.46 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 100 |
|
| 5.6720 (3), 12.6288 (7), 13.4690 (8) |
| α, β, γ (°) | 62.451 (6), 84.441 (5), 88.930 (5) |
|
| 851.00 (9) |
|
| 2 |
| Radiation type | Cu |
| μ (mm−1) | 2.80 |
| Crystal size (mm) | 0.19 × 0.18 × 0.08 |
| Data collection | |
| Diffractometer | Agilent Xcalibur, Eos, Gemini |
| Absorption correction | Multi-scan |
|
| 0.802, 1.000 |
| No. of measured, independent and observed [ | 11378, 3272, 2922 |
|
| 0.025 |
| (sin θ/λ)max (Å−1) | 0.614 |
| Refinement | |
|
| 0.036, 0.098, 1.03 |
| No. of reflections | 3272 |
| No. of parameters | 203 |
| No. of restraints | 1 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.38, −0.21 |
Computer programs: CrysAlis (Agilent, 2011 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014/7 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| C18H18N2S2 | |
| Triclinic, | |
| Cu | |
| Cell parameters from 5602 reflections | |
| θ = 3.7–71.2° | |
| α = 62.451 (6)° | µ = 2.80 mm−1 |
| β = 84.441 (5)° | |
| γ = 88.930 (5)° | Prism, light-brown |
| 0.19 × 0.18 × 0.08 mm |
| Agilent Xcalibur, Eos, Gemini diffractometer | 3272 independent reflections |
| Radiation source: Enhance (Cu) X-ray Source | 2922 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.1952 pixels mm-1 | θmax = 71.3°, θmin = 3.7° |
| ω scans | |
| Absorption correction: multi-scan CrysAlisPro (Agilent, 2011) | |
| 11378 measured reflections |
| Refinement on | 1 restraint |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.38 e Å−3 | |
| 3272 reflections | Δρmin = −0.21 e Å−3 |
| 203 parameters |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| S1 | 0.70595 (7) | 0.83091 (3) | 0.55216 (3) | 0.02412 (13) | |
| S2 | 0.61163 (7) | 0.76634 (3) | 0.36831 (3) | 0.02024 (13) | |
| N1 | 0.3820 (2) | 0.92216 (12) | 0.41092 (11) | 0.0213 (3) | |
| H1N | 0.356 (3) | 0.9703 (15) | 0.4406 (15) | 0.026* | |
| N2 | 0.2657 (2) | 0.93744 (12) | 0.31965 (11) | 0.0218 (3) | |
| C1 | 0.5581 (3) | 0.84581 (13) | 0.44483 (13) | 0.0194 (3) | |
| C2 | 0.0948 (3) | 1.01051 (14) | 0.29902 (13) | 0.0211 (3) | |
| H2 | 0.0558 | 1.0455 | 0.3474 | 0.025* | |
| C3 | −0.0385 (3) | 1.04062 (14) | 0.20473 (14) | 0.0225 (3) | |
| H3 | −0.0020 | 1.0045 | 0.1572 | 0.027* | |
| C4 | −0.2135 (3) | 1.11863 (14) | 0.18249 (14) | 0.0226 (3) | |
| H4 | −0.2465 | 1.1506 | 0.2336 | 0.027* | |
| C5 | −0.3594 (3) | 1.16011 (14) | 0.08835 (13) | 0.0213 (3) | |
| C6 | −0.3306 (3) | 1.12110 (15) | 0.00607 (14) | 0.0257 (4) | |
| H6 | −0.2076 | 1.0681 | 0.0085 | 0.031* | |
| C7 | −0.4800 (3) | 1.15911 (15) | −0.07886 (14) | 0.0286 (4) | |
| H7 | −0.4600 | 1.1311 | −0.1335 | 0.034* | |
| C8 | −0.6589 (3) | 1.23796 (16) | −0.08460 (14) | 0.0287 (4) | |
| H8 | −0.7615 | 1.2635 | −0.1427 | 0.034* | |
| C9 | −0.6863 (3) | 1.27894 (16) | −0.00499 (15) | 0.0294 (4) | |
| H9 | −0.8071 | 1.3335 | −0.0090 | 0.035* | |
| C10 | −0.5382 (3) | 1.24059 (16) | 0.08037 (14) | 0.0262 (4) | |
| H10 | −0.5584 | 1.2695 | 0.1344 | 0.031* | |
| C11 | 0.8493 (3) | 0.66793 (14) | 0.43635 (13) | 0.0209 (3) | |
| H11A | 0.9914 | 0.7149 | 0.4318 | 0.025* | |
| H11B | 0.7981 | 0.6139 | 0.5165 | 0.025* | |
| C12 | 0.9009 (3) | 0.59760 (13) | 0.37170 (13) | 0.0186 (3) | |
| C13 | 1.1047 (3) | 0.62246 (15) | 0.29770 (14) | 0.0233 (3) | |
| H13 | 1.2160 | 0.6817 | 0.2901 | 0.028* | |
| C14 | 1.1471 (3) | 0.56131 (16) | 0.23458 (14) | 0.0260 (4) | |
| H14 | 1.2876 | 0.5793 | 0.1845 | 0.031* | |
| C15 | 0.9884 (3) | 0.47474 (14) | 0.24348 (13) | 0.0226 (3) | |
| C16 | 0.7849 (3) | 0.44935 (15) | 0.31824 (15) | 0.0274 (4) | |
| H16 | 0.6740 | 0.3898 | 0.3261 | 0.033* | |
| C17 | 0.7425 (3) | 0.50994 (15) | 0.38120 (15) | 0.0267 (4) | |
| H17 | 0.6026 | 0.4913 | 0.4318 | 0.032* | |
| C18 | 1.0331 (4) | 0.40915 (17) | 0.17430 (16) | 0.0326 (4) | |
| H18A | 1.1663 | 0.4481 | 0.1168 | 0.049* | |
| H18B | 0.8910 | 0.4107 | 0.1377 | 0.049* | |
| H18C | 1.0709 | 0.3261 | 0.2234 | 0.049* |
| S1 | 0.0306 (2) | 0.0249 (2) | 0.0242 (2) | 0.00799 (17) | −0.01188 (17) | −0.01611 (17) |
| S2 | 0.0252 (2) | 0.0196 (2) | 0.0208 (2) | 0.00461 (15) | −0.00790 (15) | −0.01252 (16) |
| N1 | 0.0254 (7) | 0.0217 (7) | 0.0226 (7) | 0.0054 (6) | −0.0082 (5) | −0.0141 (6) |
| N2 | 0.0242 (7) | 0.0220 (7) | 0.0204 (7) | 0.0018 (6) | −0.0062 (5) | −0.0101 (5) |
| C1 | 0.0226 (8) | 0.0183 (7) | 0.0183 (7) | −0.0005 (6) | −0.0024 (6) | −0.0094 (6) |
| C2 | 0.0219 (8) | 0.0205 (8) | 0.0234 (8) | 0.0005 (6) | −0.0030 (6) | −0.0121 (6) |
| C3 | 0.0247 (9) | 0.0209 (8) | 0.0220 (8) | 0.0002 (6) | −0.0033 (6) | −0.0098 (6) |
| C4 | 0.0237 (8) | 0.0230 (8) | 0.0222 (8) | −0.0018 (6) | −0.0022 (6) | −0.0113 (6) |
| C5 | 0.0206 (8) | 0.0190 (7) | 0.0210 (8) | −0.0014 (6) | −0.0024 (6) | −0.0062 (6) |
| C6 | 0.0290 (9) | 0.0219 (8) | 0.0264 (9) | 0.0035 (7) | −0.0059 (7) | −0.0108 (7) |
| C7 | 0.0383 (10) | 0.0246 (8) | 0.0227 (8) | −0.0004 (7) | −0.0067 (7) | −0.0099 (7) |
| C8 | 0.0258 (9) | 0.0293 (9) | 0.0228 (8) | −0.0015 (7) | −0.0078 (7) | −0.0041 (7) |
| C9 | 0.0232 (9) | 0.0322 (9) | 0.0271 (9) | 0.0067 (7) | −0.0034 (7) | −0.0089 (7) |
| C10 | 0.0249 (9) | 0.0298 (9) | 0.0228 (8) | 0.0037 (7) | −0.0011 (7) | −0.0117 (7) |
| C11 | 0.0228 (8) | 0.0208 (8) | 0.0222 (8) | 0.0042 (6) | −0.0070 (6) | −0.0119 (6) |
| C12 | 0.0213 (8) | 0.0172 (7) | 0.0178 (7) | 0.0048 (6) | −0.0057 (6) | −0.0080 (6) |
| C13 | 0.0199 (8) | 0.0263 (8) | 0.0256 (8) | −0.0009 (6) | −0.0040 (6) | −0.0133 (7) |
| C14 | 0.0208 (8) | 0.0337 (9) | 0.0247 (8) | 0.0026 (7) | 0.0001 (6) | −0.0150 (7) |
| C15 | 0.0283 (9) | 0.0227 (8) | 0.0191 (7) | 0.0073 (7) | −0.0058 (6) | −0.0112 (6) |
| C16 | 0.0317 (9) | 0.0233 (8) | 0.0297 (9) | −0.0050 (7) | 0.0008 (7) | −0.0151 (7) |
| C17 | 0.0276 (9) | 0.0279 (9) | 0.0275 (9) | −0.0050 (7) | 0.0064 (7) | −0.0168 (7) |
| C18 | 0.0408 (11) | 0.0339 (10) | 0.0314 (9) | 0.0077 (8) | −0.0038 (8) | −0.0222 (8) |
| S1—C1 | 1.6752 (16) | C9—C10 | 1.385 (2) |
| S2—C1 | 1.7455 (16) | C9—H9 | 0.9500 |
| S2—C11 | 1.8233 (16) | C10—H10 | 0.9500 |
| N1—C1 | 1.334 (2) | C11—C12 | 1.513 (2) |
| N1—N2 | 1.3845 (18) | C11—H11A | 0.9900 |
| N1—H1N | 0.873 (9) | C11—H11B | 0.9900 |
| N2—C2 | 1.284 (2) | C12—C17 | 1.390 (2) |
| C2—C3 | 1.435 (2) | C12—C13 | 1.389 (2) |
| C2—H2 | 0.9500 | C13—C14 | 1.392 (2) |
| C3—C4 | 1.339 (2) | C13—H13 | 0.9500 |
| C3—H3 | 0.9500 | C14—C15 | 1.383 (2) |
| C4—C5 | 1.463 (2) | C14—H14 | 0.9500 |
| C4—H4 | 0.9500 | C15—C16 | 1.393 (2) |
| C5—C10 | 1.398 (2) | C15—C18 | 1.510 (2) |
| C5—C6 | 1.402 (2) | C16—C17 | 1.384 (2) |
| C6—C7 | 1.386 (2) | C16—H16 | 0.9500 |
| C6—H6 | 0.9500 | C17—H17 | 0.9500 |
| C7—C8 | 1.390 (3) | C18—H18A | 0.9800 |
| C7—H7 | 0.9500 | C18—H18B | 0.9800 |
| C8—C9 | 1.386 (3) | C18—H18C | 0.9800 |
| C8—H8 | 0.9500 | ||
| C1—S2—C11 | 103.44 (7) | C9—C10—H10 | 119.5 |
| C1—N1—N2 | 120.95 (13) | C5—C10—H10 | 119.5 |
| C1—N1—H1N | 118.5 (13) | C12—C11—S2 | 104.86 (10) |
| N2—N1—H1N | 119.9 (13) | C12—C11—H11A | 110.8 |
| C2—N2—N1 | 114.17 (13) | S2—C11—H11A | 110.8 |
| N1—C1—S1 | 121.06 (12) | C12—C11—H11B | 110.8 |
| N1—C1—S2 | 113.74 (11) | S2—C11—H11B | 110.8 |
| S1—C1—S2 | 125.20 (10) | H11A—C11—H11B | 108.9 |
| N2—C2—C3 | 121.60 (15) | C17—C12—C13 | 118.22 (15) |
| N2—C2—H2 | 119.2 | C17—C12—C11 | 121.22 (14) |
| C3—C2—H2 | 119.2 | C13—C12—C11 | 120.52 (14) |
| C4—C3—C2 | 121.28 (15) | C12—C13—C14 | 120.52 (15) |
| C4—C3—H3 | 119.4 | C12—C13—H13 | 119.7 |
| C2—C3—H3 | 119.4 | C14—C13—H13 | 119.7 |
| C3—C4—C5 | 127.33 (16) | C15—C14—C13 | 121.22 (15) |
| C3—C4—H4 | 116.3 | C15—C14—H14 | 119.4 |
| C5—C4—H4 | 116.3 | C13—C14—H14 | 119.4 |
| C10—C5—C6 | 118.13 (15) | C14—C15—C16 | 118.22 (15) |
| C10—C5—C4 | 119.07 (15) | C14—C15—C18 | 121.27 (16) |
| C6—C5—C4 | 122.79 (15) | C16—C15—C18 | 120.51 (15) |
| C7—C6—C5 | 120.63 (16) | C17—C16—C15 | 120.68 (16) |
| C7—C6—H6 | 119.7 | C17—C16—H16 | 119.7 |
| C5—C6—H6 | 119.7 | C15—C16—H16 | 119.7 |
| C6—C7—C8 | 120.42 (17) | C16—C17—C12 | 121.16 (15) |
| C6—C7—H7 | 119.8 | C16—C17—H17 | 119.4 |
| C8—C7—H7 | 119.8 | C12—C17—H17 | 119.4 |
| C9—C8—C7 | 119.50 (16) | C15—C18—H18A | 109.5 |
| C9—C8—H8 | 120.3 | C15—C18—H18B | 109.5 |
| C7—C8—H8 | 120.3 | H18A—C18—H18B | 109.5 |
| C8—C9—C10 | 120.21 (17) | C15—C18—H18C | 109.5 |
| C8—C9—H9 | 119.9 | H18A—C18—H18C | 109.5 |
| C10—C9—H9 | 119.9 | H18B—C18—H18C | 109.5 |
| C9—C10—C5 | 121.09 (17) | ||
| C1—N1—N2—C2 | 177.67 (14) | C6—C5—C10—C9 | 1.3 (2) |
| N2—N1—C1—S1 | 177.67 (11) | C4—C5—C10—C9 | −177.62 (15) |
| N2—N1—C1—S2 | −2.77 (19) | C1—S2—C11—C12 | −179.86 (10) |
| C11—S2—C1—N1 | −178.08 (11) | S2—C11—C12—C17 | −71.41 (17) |
| C11—S2—C1—S1 | 1.45 (13) | S2—C11—C12—C13 | 106.09 (15) |
| N1—N2—C2—C3 | 177.41 (13) | C17—C12—C13—C14 | 0.4 (2) |
| N2—C2—C3—C4 | −178.70 (15) | C11—C12—C13—C14 | −177.20 (15) |
| C2—C3—C4—C5 | 178.23 (15) | C12—C13—C14—C15 | 0.1 (3) |
| C3—C4—C5—C10 | 178.69 (16) | C13—C14—C15—C16 | −0.5 (3) |
| C3—C4—C5—C6 | −0.2 (3) | C13—C14—C15—C18 | 179.43 (16) |
| C10—C5—C6—C7 | −1.7 (2) | C14—C15—C16—C17 | 0.4 (3) |
| C4—C5—C6—C7 | 177.21 (15) | C18—C15—C16—C17 | −179.51 (17) |
| C5—C6—C7—C8 | 0.9 (3) | C15—C16—C17—C12 | 0.1 (3) |
| C6—C7—C8—C9 | 0.3 (3) | C13—C12—C17—C16 | −0.5 (3) |
| C7—C8—C9—C10 | −0.7 (3) | C11—C12—C17—C16 | 177.10 (15) |
| C8—C9—C10—C5 | −0.2 (3) |
| H··· | ||||
| N1—H1 | 0.87 (2) | 2.57 (2) | 3.3984 (17) | 158 (2) |
| C14—H14··· | 0.95 | 2.95 | 3.6749 (19) | 134 |
| C8—H8··· | 0.95 | 2.75 | 3.5571 (19) | 143 |
| C11—H11 | 0.99 | 2.78 | 3.5110 (18) | 131 |