Literature DB >> 21201362

Bis[benzyl N'-(3-phenyl-prop-2-enyl-idene)hydrazinecarbodithio-ato-κN',S]copper(II).

M T H Tarafder, M Toihidul Islam, M A A A A Islam, Suchada Chantrapromma, Hoong-Kun Fun.   

Abstract

The Cu(II) atom of the title complex, [Cu(C(17)H(15)N(2)S(2))(2)], lies on a twofold rotation axis, and is in a distorted tetra-hedral geometry with the two bidentate N(2)S(2) Schiff bases. In the crystal structure, the mol-ecules are inter-connected into chains along the c axis by weak C-H⋯S inter-molecular inter-actions. The crystal packing is further stabilized by C-H⋯π inter-actions.

Entities:  

Year:  2008        PMID: 21201362      PMCID: PMC2960465          DOI: 10.1107/S1600536808002262

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For the synthesis and structures of S-benzyl­dithio­carbaza­tes, see: Ali & Tarafder (1977 ▶); Shanmuga Sundara Raj et al. (2000 ▶). For related CuII complexes, see: Ali et al. (2008 ▶); Castiñeiras et al. (1998 ▶); Goswami & Eichhorn (2000 ▶). For bioactivities of S-benzyl­dithio­carbazate metal complexes, see: Ali et al. (2002 ▶, 2008 ▶); Tarafder et al. (2001 ▶, 2002 ▶).

Experimental

Crystal data

[Cu(C17H15N2S2)2] M = 686.45 Orthorhombic, a = 36.1410 (7) Å b = 9.9372 (2) Å c = 8.7598 (2) Å V = 3146.00 (11) Å3 Z = 4 Mo Kα radiation μ = 0.99 mm−1 T = 100.0 (1) K 0.57 × 0.29 × 0.10 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.603, T max = 0.906 84850 measured reflections 6922 independent reflections 5675 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.083 S = 1.04 6922 reflections 196 parameters H-atom parameters constrained Δρmax = 0.52 e Å−3 Δρmin = −0.43 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808002262/ci2558sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808002262/ci2558Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C17H15N2S2)2]F000 = 1420
Mr = 686.45Dx = 1.449 Mg m3
Orthorhombic, PbcnMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 6922 reflections
a = 36.1410 (7) Åθ = 2.1–35.0º
b = 9.9372 (2) ŵ = 0.99 mm1
c = 8.7598 (2) ÅT = 100.0 (1) K
V = 3146.00 (11) Å3Plate, green
Z = 40.57 × 0.29 × 0.10 mm
Bruker SMART APEXII CCD area-detector diffractometer6922 independent reflections
Radiation source: fine-focus sealed tube5675 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.047
Detector resolution: 8.33 pixels mm-1θmax = 35.0º
T = 100.0(1) Kθmin = 2.1º
ω scansh = −58→57
Absorption correction: multi-scan(SADABS; Bruker, 2005)k = −16→16
Tmin = 0.603, Tmax = 0.906l = −13→14
84850 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.083  w = 1/[σ2(Fo2) + (0.0303P)2 + 2.083P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
6922 reflectionsΔρmax = 0.52 e Å3
196 parametersΔρmin = −0.43 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temparture data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.00000.07778 (2)0.75000.01578 (5)
S1−0.056798 (8)−0.01045 (3)0.70614 (4)0.02194 (6)
S2−0.126264 (8)0.09538 (4)0.81392 (4)0.02454 (7)
N10.02535 (3)0.20538 (10)0.59588 (11)0.01718 (17)
N20.06393 (3)0.20720 (10)0.59855 (12)0.01796 (17)
C1−0.10931 (3)0.28518 (12)0.39861 (14)0.0206 (2)
H1A−0.10060.21480.45860.025*
C2−0.14653 (3)0.29131 (13)0.36079 (15)0.0229 (2)
H2A−0.16260.22520.39610.027*
C3−0.15998 (3)0.39565 (14)0.27034 (15)0.0239 (2)
H3A−0.18500.39980.24620.029*
C4−0.13588 (4)0.49338 (15)0.21640 (16)0.0251 (2)
H4A−0.14470.56250.15480.030*
C5−0.09847 (3)0.48806 (13)0.25450 (15)0.0222 (2)
H5A−0.08250.55390.21810.027*
C6−0.08476 (3)0.38468 (12)0.34685 (13)0.01828 (19)
C7−0.04535 (3)0.38225 (12)0.38369 (14)0.0192 (2)
H7A−0.03050.44680.33740.023*
C8−0.02862 (3)0.29470 (12)0.47880 (14)0.0194 (2)
H8A−0.04330.23410.53250.023*
C90.01065 (3)0.29035 (12)0.50134 (13)0.01849 (19)
H9A0.02580.34930.44740.022*
C10−0.07825 (3)0.11156 (12)0.81865 (13)0.01794 (19)
C11−0.14240 (3)0.20513 (14)0.96662 (15)0.0230 (2)
H11A−0.12950.18521.06110.028*
H11B−0.13810.29870.94050.028*
C12−0.18327 (3)0.17791 (13)0.98351 (14)0.0210 (2)
C13−0.19556 (4)0.07096 (16)1.07276 (17)0.0295 (3)
H13A−0.17840.01661.12230.035*
C14−0.23304 (4)0.04438 (17)1.08878 (18)0.0326 (3)
H14A−0.2409−0.02661.14990.039*
C15−0.25879 (3)0.12346 (16)1.01385 (16)0.0282 (3)
H15A−0.28390.10591.02460.034*
C16−0.24696 (4)0.22864 (16)0.92307 (19)0.0318 (3)
H16A−0.26420.28130.87170.038*
C17−0.20935 (4)0.25621 (15)0.90804 (18)0.0284 (3)
H17A−0.20160.32750.84710.034*
U11U22U33U12U13U23
Cu10.01427 (8)0.01721 (9)0.01586 (8)0.0000.00375 (6)0.000
S10.02087 (12)0.02213 (13)0.02284 (13)−0.00456 (10)0.00520 (10)−0.00534 (10)
S20.01540 (12)0.03281 (16)0.02541 (15)−0.00349 (11)−0.00031 (10)−0.00859 (12)
N10.0146 (4)0.0197 (4)0.0172 (4)0.0005 (3)0.0006 (3)−0.0007 (3)
N20.0132 (4)0.0216 (4)0.0190 (4)−0.0009 (3)0.0002 (3)0.0003 (3)
C10.0179 (5)0.0216 (5)0.0222 (5)0.0011 (4)0.0005 (4)0.0008 (4)
C20.0181 (5)0.0250 (5)0.0254 (6)−0.0006 (4)0.0010 (4)−0.0017 (5)
C30.0180 (5)0.0302 (6)0.0236 (6)0.0046 (4)−0.0021 (4)−0.0034 (5)
C40.0225 (5)0.0287 (6)0.0242 (6)0.0055 (5)−0.0033 (4)0.0034 (5)
C50.0213 (5)0.0231 (5)0.0222 (5)0.0013 (4)−0.0004 (4)0.0031 (4)
C60.0165 (4)0.0205 (5)0.0178 (5)0.0017 (4)−0.0001 (4)−0.0009 (4)
C70.0169 (4)0.0209 (5)0.0199 (5)−0.0002 (4)0.0008 (4)0.0006 (4)
C80.0153 (4)0.0224 (5)0.0203 (5)−0.0004 (4)0.0006 (4)0.0016 (4)
C90.0161 (4)0.0213 (5)0.0181 (5)−0.0003 (4)0.0005 (4)0.0009 (4)
C100.0159 (4)0.0213 (5)0.0167 (5)−0.0014 (4)0.0009 (3)0.0001 (4)
C110.0153 (5)0.0284 (6)0.0254 (6)−0.0008 (4)−0.0003 (4)−0.0058 (5)
C120.0149 (4)0.0257 (5)0.0223 (5)0.0001 (4)−0.0014 (4)−0.0032 (4)
C130.0198 (5)0.0381 (7)0.0308 (7)0.0006 (5)−0.0043 (5)0.0095 (6)
C140.0224 (6)0.0428 (8)0.0326 (7)−0.0063 (5)−0.0008 (5)0.0105 (6)
C150.0159 (5)0.0398 (7)0.0290 (6)−0.0030 (5)0.0005 (4)−0.0015 (6)
C160.0171 (5)0.0363 (7)0.0419 (8)0.0034 (5)−0.0039 (5)0.0057 (6)
C170.0190 (5)0.0294 (6)0.0370 (7)0.0005 (5)−0.0012 (5)0.0070 (5)
Cu1—N1i2.0663 (10)C6—C71.4606 (16)
Cu1—N12.0663 (10)C7—C81.3478 (17)
Cu1—S1i2.2648 (3)C7—H7A0.93
Cu1—S12.2649 (3)C8—C91.4335 (16)
S1—C101.7442 (12)C8—H8A0.93
S2—C101.7432 (11)C9—H9A0.93
S2—C111.8217 (13)C10—N2i1.3027 (15)
N1—C91.2965 (15)C11—C121.5088 (16)
N1—N21.3949 (13)C11—H11A0.97
N2—C10i1.3027 (15)C11—H11B0.97
C1—C21.3866 (16)C12—C171.3897 (18)
C1—C61.4037 (17)C12—C131.3922 (19)
C1—H1A0.93C13—C141.3871 (19)
C2—C31.3926 (19)C13—H13A0.93
C2—H2A0.93C14—C151.384 (2)
C3—C41.388 (2)C14—H14A0.93
C3—H3A0.93C15—C161.381 (2)
C4—C51.3937 (17)C15—H15A0.93
C4—H4A0.93C16—C171.3927 (19)
C5—C61.3983 (17)C16—H16A0.93
C5—H5A0.93C17—H17A0.93
N1i—Cu1—N1104.29 (5)C7—C8—C9123.27 (11)
N1i—Cu1—S1i121.90 (3)C7—C8—H8A118.4
N1—Cu1—S1i86.94 (3)C9—C8—H8A118.4
N1i—Cu1—S186.94 (3)N1—C9—C8120.88 (11)
N1—Cu1—S1121.90 (3)N1—C9—H9A119.6
S1i—Cu1—S1134.452 (19)C8—C9—H9A119.6
C10—S1—Cu192.17 (4)N2i—C10—S2118.41 (9)
C10—S2—C11104.25 (6)N2i—C10—S1130.18 (9)
C9—N1—N2114.32 (10)S2—C10—S1111.41 (6)
C9—N1—Cu1129.45 (8)C12—C11—S2106.15 (8)
N2—N1—Cu1116.12 (7)C12—C11—H11A110.5
C10i—N2—N1113.39 (10)S2—C11—H11A110.5
C2—C1—C6120.33 (11)C12—C11—H11B110.5
C2—C1—H1A119.8S2—C11—H11B110.5
C6—C1—H1A119.8H11A—C11—H11B108.7
C1—C2—C3120.49 (12)C17—C12—C13118.55 (11)
C1—C2—H2A119.8C17—C12—C11121.14 (12)
C3—C2—H2A119.8C13—C12—C11120.29 (11)
C4—C3—C2119.71 (11)C14—C13—C12120.92 (13)
C4—C3—H3A120.1C14—C13—H13A119.5
C2—C3—H3A120.1C12—C13—H13A119.5
C3—C4—C5120.07 (12)C15—C14—C13120.04 (14)
C3—C4—H4A120.0C15—C14—H14A120.0
C5—C4—H4A120.0C13—C14—H14A120.0
C4—C5—C6120.68 (12)C16—C15—C14119.66 (12)
C4—C5—H5A119.7C16—C15—H15A120.2
C6—C5—H5A119.7C14—C15—H15A120.2
C5—C6—C1118.71 (11)C15—C16—C17120.35 (13)
C5—C6—C7119.04 (11)C15—C16—H16A119.8
C1—C6—C7122.23 (11)C17—C16—H16A119.8
C8—C7—C6125.77 (11)C12—C17—C16120.46 (13)
C8—C7—H7A117.1C12—C17—H17A119.8
C6—C7—H7A117.1C16—C17—H17A119.8
N1i—Cu1—S1—C106.84 (5)C1—C6—C7—C8−5.87 (19)
N1—Cu1—S1—C10−98.11 (5)C6—C7—C8—C9174.88 (11)
S1i—Cu1—S1—C10140.38 (4)N2—N1—C9—C8176.16 (10)
N1i—Cu1—N1—C9−64.62 (10)Cu1—N1—C9—C8−7.90 (17)
S1i—Cu1—N1—C9173.21 (11)C7—C8—C9—N1179.00 (12)
S1—Cu1—N1—C930.76 (12)C11—S2—C10—N2i−11.46 (12)
N1i—Cu1—N1—N2111.27 (8)C11—S2—C10—S1168.25 (7)
S1i—Cu1—N1—N2−10.91 (7)Cu1—S1—C10—N2i−4.35 (12)
S1—Cu1—N1—N2−153.36 (7)Cu1—S1—C10—S2175.98 (6)
C9—N1—N2—C10i−172.92 (11)C10—S2—C11—C12−171.27 (9)
Cu1—N1—N2—C10i10.56 (12)S2—C11—C12—C17−94.14 (13)
C6—C1—C2—C30.38 (19)S2—C11—C12—C1384.28 (14)
C1—C2—C3—C40.7 (2)C17—C12—C13—C14−1.3 (2)
C2—C3—C4—C5−0.9 (2)C11—C12—C13—C14−179.71 (14)
C3—C4—C5—C60.1 (2)C12—C13—C14—C150.9 (2)
C4—C5—C6—C10.94 (19)C13—C14—C15—C160.1 (2)
C4—C5—C6—C7179.73 (12)C14—C15—C16—C17−0.7 (2)
C2—C1—C6—C5−1.18 (18)C13—C12—C17—C160.6 (2)
C2—C1—C6—C7−179.93 (11)C11—C12—C17—C16179.09 (13)
C5—C6—C7—C8175.39 (12)C15—C16—C17—C120.3 (2)
D—H···AD—HH···AD···AD—H···A
C13—H13A···S2ii0.932.763.6698 (15)167
C11—H11A···Cg1iii0.972.983.5806 (14)121
Cu1—N12.0663 (10)
Cu1—S12.2649 (3)
N1i—Cu1—N1104.29 (5)
N1—Cu1—S1i86.94 (3)
N1—Cu1—S1121.90 (3)
S1i—Cu1—S1134.452 (19)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 phenyl ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13A⋯S2ii0.932.763.6698 (15)167
C11—H11ACg1iii0.972.983.5806 (14)121

Symmetry codes: (ii) ; (iii) .

  3 in total

1.  trans-cis S-benzyl dithiocarbazate

Authors: 
Journal:  Acta Crystallogr C       Date:  2000-10       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Biological activity of palladium(II) and platinum(II) complexes of the acetone Schiff bases of S-methyl- and S-benzyldithiocarbazate and the X-ray crystal structure of the [Pd(asme)2] (asme=anionic form of the acetone Schiff base of S-methyldithiocarbazate) complex.

Authors:  Mohammad Akbar Ali; Aminul Huq Mirza; Raymond J Butcher; M T H Tarafder; Tan Boon Keat; A Manaf Ali
Journal:  J Inorg Biochem       Date:  2002-11-25       Impact factor: 4.155

  3 in total
  9 in total

1.  Bis[benzyl N'-(3-phenyl-prop-2-enyl-idene)hydrazinecarbodithio-ato-κN',S]zinc(II).

Authors:  Hoong-Kun Fun; Suchada Chantrapromma; M T H Tarafder; M Toihidul Islam; C M Zakaria; M A A A A Islam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-05

2.  Benzyl 3-[(E,E)-3-phenyl-prop-2-enyl-idene]dithio-carbazate.

Authors:  M T H Tarafder; K A Crouse; M Toihidul Islam; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-10

3.  Benzyl N'-benzhydrylidene-hydrazine-carbodithio-ate.

Authors:  Bing-Xiang Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-29

4.  Benzyl N'-(2-chloro-benzyl-idene)hydrazinecarbodithio-ate.

Authors:  Zhi-Qiang Shi; Ning-Ning Ji; Qin-Qin Ji
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08

5.  Bis[benzyl N'-(3-phenyl-prop-2-enyl-idene)dithio-carbazato-κ(2)N',S]mercury(II).

Authors:  M A A A A Islam; M S Reza; M T H Tarafder; M C Sheikh; E Zangrando
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16

6.  Bis[benzyl 3-(3-phenyl-prop-2-enyl-idene)dithio-carbazato-κ(2)N(3),S]cadmium.

Authors:  M S Reza; M A A A A Islam; M T H Tarafder; M C Sheikh; E Zangrando
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30

7.  Crystal structure of bis-{S-hexyl 3-[4-(di-methyl-amino)-benzyl-idene]di-thio-carbazato-κ(2) N (3),S}copper(II).

Authors:  E Zangrando; M S Begum; R Miyatake; M C Sheikh; Md M Hossain
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-05-28

8.  Crystal structure of bis-[μ-S-hexyl 3-(2-oxido-benzyl-idene)di-thio-carbazato-κ(4) O,N (3),S:O]dicopper(II).

Authors:  M S Begum; M B H Howlader; M C Sheikh; R Miyatake; E Zangrando
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-12-09

9.  Cis versus trans arrangement of di-thio-carbazate ligands in bis-chelated Ni and Cu complexes.

Authors:  Khurshida Begum; Sabina Begum; Chanmiya Sheikh; Ryuta Miyatake; Ennio Zangrando
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2020-04-21
  9 in total

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