Literature DB >> 25878852

Crystal structure of S-hexyl (E)-3-(4-methyl-benzyl-idene)di-thio-carbazate.

M B H Howlader1, M S Begum1, M C Sheikh2, R Miyatake3, E Zangrando4.   

Abstract

In the title compound, C15H22N2S2, the di-thio-carbazate group adopts an E conformation with respect to the C=N bond of the benzyl-idene moiety. In the crystal, mol-ecules are linked by pairs of N-H⋯S hydrogen bonds, forming inversion dimers with an R (2) 2(8) ring motif. The dimers are linked via C-H⋯π inter-actions, forming chains propagating along [100].

Entities:  

Keywords:  C—H⋯π inter­actions.; N—H⋯S hydrogen bonds; S-hexyl di­thio­carbazate; bidentate Schiff base; crystal structure

Year:  2015        PMID: 25878852      PMCID: PMC4384598          DOI: 10.1107/S2056989015000080

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological properties of bidentate Schiff bases of S-methyl di­thio­carbazate or S-benzyl di­thio­carbaza­te and their bivalent n class="Chemical">metal complexes, see: Chan et al. (2008 ▸); How et al. (2008 ▸); Tarafder et al. (2002 ▸); Ali et al. (2002 ▸); Chew et al. (2004 ▸); Crouse et al. (2004 ▸). For their N,S-chelating behavior towards metal atoms, see for example: Islam et al. (2011 ▸). For the structures of related compounds, see: Tarafder et al. (2008 ▸, 2010 ▸).

Experimental

Crystal data

C15H22N2S2 M = 294.47 Triclinic, a = 4.79244 (9) Å b = 11.3790 (2) Å c = 14.5382 (3) Å α = 100.1666 (7)° β = 91.2117 (7)° γ = 94.6754 (7)° V = 777.26 (3) Å3 Z = 2 Cu Kα radiation μ = 3.00 mm−1 T = 173 K 0.19 × 0.11 × 0.07 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Rigaku, 2001 ▸) T min = 0.615, T max = 0.811 8970 measured reflections 2802 independent reflections 2162 reflections with F 2 > 2.0σ(F 2) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.129 S = 1.04 2802 reflections 176 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.26 e Å−3

Data collection: RAPID-AUTO (Rigaku, 2001 ▸); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: CrystalStructure (Rigaku, 2010 ▸); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablock(s) General, I. DOI: 10.1107/S2056989015000080/su5050sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015000080/su5050Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015000080/su5050Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015000080/su5050fig1.tif A view of the mol­ecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. Click here for additional data file. a . DOI: 10.1107/S2056989015000080/su5050fig2.tif A partial view along the a axis of the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (see Table 1 for details; H atoms not involved in hydrogen bonding have been omitted for clarity). CCDC reference: 1035819 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H22N2S2Z = 2
Mr = 294.47F(000) = 316.00
Triclinic, P1Dx = 1.258 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54187 Å
a = 4.79244 (9) ÅCell parameters from 7029 reflections
b = 11.3790 (2) Åθ = 3.1–68.2°
c = 14.5382 (3) ŵ = 3.00 mm1
α = 100.1666 (7)°T = 173 K
β = 91.2117 (7)°Prism, colorless
γ = 94.6754 (7)°0.19 × 0.11 × 0.07 mm
V = 777.26 (3) Å3
Rigaku R-AXIS RAPID diffractometer2162 reflections with F2 > 2.0σ(F2)
Detector resolution: 10.000 pixels mm-1Rint = 0.052
ω scansθmax = 68.2°
Absorption correction: multi-scan (ABSCOR; Rigaku, 2001)h = −5→5
Tmin = 0.615, Tmax = 0.811k = −13→13
8970 measured reflectionsl = −17→17
2802 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0784P)2] where P = (Fo2 + 2Fc2)/3
2802 reflections(Δ/σ)max < 0.001
176 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.26 e Å3
Primary atom site location: structure-invariant direct methods
Experimental. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Geometry. ENTER SPECIAL DETAILS OF THE MOLECULAR GEOMETRY
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
S11.54116 (12)0.83289 (5)0.90597 (4)0.0326 (2)
S21.17201 (12)0.64667 (5)0.98677 (4)0.0333 (2)
N11.0048 (4)0.84542 (15)1.10436 (12)0.0293 (5)
N21.2012 (4)0.87708 (16)1.04349 (13)0.0297 (5)
C10.0848 (5)0.8428 (3)1.42942 (17)0.0390 (6)
C20.2994 (5)0.8663 (2)1.35925 (15)0.0300 (5)
C30.3922 (5)0.77235 (19)1.29544 (15)0.0333 (6)
C40.5864 (5)0.79268 (19)1.23002 (15)0.0327 (6)
C50.6987 (5)0.90853 (18)1.22664 (14)0.0282 (5)
C60.6060 (5)1.00311 (19)1.28972 (15)0.0314 (6)
C70.4103 (5)0.9817 (2)1.35483 (15)0.0334 (6)
C80.9098 (5)0.93191 (19)1.15966 (15)0.0281 (5)
C91.3050 (5)0.79357 (19)0.98029 (15)0.0290 (5)
C101.3277 (5)0.55512 (19)0.88956 (15)0.0329 (6)
C111.1314 (5)0.51925 (18)0.80356 (15)0.0333 (6)
C121.0591 (5)0.62287 (19)0.75707 (15)0.0329 (6)
C130.8582 (5)0.58746 (19)0.67205 (15)0.0330 (6)
C140.7870 (5)0.69523 (19)0.63000 (16)0.0363 (6)
C150.5920 (6)0.6635 (3)0.54445 (17)0.0445 (7)
H10.07070.75761.43380.0468*
H2−0.09750.86471.40950.0468*
H30.14170.89081.49070.0468*
H40.32010.69251.29710.0400*
H50.64400.72701.18690.0393*
H60.67781.08301.28800.0377*
H70.35051.04741.39740.0401*
H80.97721.01211.15720.0337*
H91.266 (5)0.948 (3)1.0471 (17)0.044 (8)*
H101.49870.60000.87230.0395*
H111.38480.48170.90980.0395*
H121.21930.46030.75730.0400*
H130.95560.47910.82200.0400*
H141.23460.66210.73760.0394*
H150.97450.68260.80370.0394*
H160.94420.53000.62400.0396*
H170.68340.54670.69070.0396*
H180.69900.75190.67810.0435*
H190.96280.73670.61290.0435*
H200.55740.73660.52060.0534*
H210.41420.62530.56120.0534*
H220.67820.60810.49610.0534*
U11U22U33U12U13U23
S10.0382 (4)0.0272 (4)0.0329 (4)0.0014 (3)0.0096 (3)0.0062 (3)
S20.0453 (5)0.0245 (3)0.0317 (4)0.0021 (3)0.0077 (3)0.0087 (3)
N10.0353 (12)0.0273 (10)0.0259 (10)0.0011 (9)0.0034 (9)0.0070 (8)
N20.0342 (12)0.0236 (10)0.0318 (11)0.0010 (9)0.0072 (9)0.0062 (8)
C10.0374 (15)0.0452 (14)0.0383 (14)0.0048 (12)0.0056 (11)0.0169 (11)
C20.0308 (14)0.0345 (12)0.0266 (12)0.0037 (10)−0.0019 (10)0.0104 (10)
C30.0404 (15)0.0240 (11)0.0361 (13)−0.0023 (10)0.0017 (11)0.0091 (10)
C40.0413 (15)0.0255 (11)0.0312 (12)0.0045 (11)0.0007 (11)0.0039 (10)
C50.0324 (14)0.0268 (11)0.0263 (12)0.0034 (10)−0.0014 (10)0.0071 (9)
C60.0350 (14)0.0238 (11)0.0364 (13)0.0016 (10)0.0032 (11)0.0079 (10)
C70.0399 (15)0.0290 (12)0.0314 (12)0.0060 (11)0.0044 (11)0.0033 (10)
C80.0296 (13)0.0255 (11)0.0304 (12)0.0025 (10)0.0003 (10)0.0083 (9)
C90.0333 (14)0.0280 (11)0.0274 (11)0.0054 (10)−0.0011 (10)0.0084 (9)
C100.0406 (15)0.0249 (11)0.0346 (13)0.0086 (11)0.0042 (11)0.0061 (10)
C110.0416 (15)0.0245 (11)0.0350 (13)0.0034 (11)0.0046 (11)0.0074 (10)
C120.0396 (15)0.0254 (11)0.0345 (13)0.0044 (10)0.0050 (11)0.0069 (10)
C130.0362 (14)0.0272 (12)0.0364 (13)0.0021 (10)0.0056 (11)0.0077 (10)
C140.0416 (16)0.0301 (12)0.0388 (13)0.0035 (11)0.0048 (12)0.0100 (10)
C150.0494 (17)0.0415 (14)0.0449 (15)0.0004 (13)−0.0021 (13)0.0160 (12)
S1—C91.670 (3)C1—H20.980
S2—C91.759 (3)C1—H30.980
S2—C101.814 (3)C3—H40.950
N1—N21.375 (3)C4—H50.950
N1—C81.277 (3)C6—H60.950
N2—C91.335 (3)C7—H70.950
C1—C21.505 (4)C8—H80.950
C2—C31.395 (3)C10—H100.990
C2—C71.389 (4)C10—H110.990
C3—C41.380 (4)C11—H120.990
C4—C51.392 (3)C11—H130.990
C5—C61.394 (3)C12—H140.990
C5—C81.460 (4)C12—H150.990
C6—C71.384 (4)C13—H160.990
C10—C111.524 (3)C13—H170.990
C11—C121.518 (4)C14—H180.990
C12—C131.526 (3)C14—H190.990
C13—C141.523 (4)C15—H200.980
C14—C151.512 (4)C15—H210.980
N2—H90.84 (3)C15—H220.980
C1—H10.980
C9—S2—C10103.78 (11)C2—C7—H7119.297
N2—N1—C8115.97 (18)C6—C7—H7119.294
N1—N2—C9120.61 (18)N1—C8—H8119.724
C1—C2—C3120.9 (2)C5—C8—H8119.729
C1—C2—C7121.6 (2)S2—C10—H10108.909
C3—C2—C7117.5 (2)S2—C10—H11108.910
C2—C3—C4121.5 (2)C11—C10—H10108.900
C3—C4—C5120.6 (2)C11—C10—H11108.913
C4—C5—C6118.3 (2)H10—C10—H11107.737
C4—C5—C8121.55 (19)C10—C11—H12108.647
C6—C5—C8120.14 (19)C10—C11—H13108.645
C5—C6—C7120.6 (2)C12—C11—H12108.656
C2—C7—C6121.4 (2)C12—C11—H13108.654
N1—C8—C5120.5 (2)H12—C11—H13107.587
S1—C9—S2126.25 (13)C11—C12—H14108.631
S1—C9—N2120.30 (17)C11—C12—H15108.636
S2—C9—N2113.44 (17)C13—C12—H14108.637
S2—C10—C11113.33 (17)C13—C12—H15108.627
C10—C11—C12114.44 (17)H14—C12—H15107.578
C11—C12—C13114.52 (18)C12—C13—H16109.166
C12—C13—C14112.20 (17)C12—C13—H17109.171
C13—C14—C15113.80 (18)C14—C13—H16109.159
N1—N2—H9121.2 (17)C14—C13—H17109.167
C9—N2—H9118.1 (17)H16—C13—H17107.879
C2—C1—H1109.474C13—C14—H18108.795
C2—C1—H2109.467C13—C14—H19108.797
C2—C1—H3109.465C15—C14—H18108.803
H1—C1—H2109.474C15—C14—H19108.808
H1—C1—H3109.480H18—C14—H19107.672
H2—C1—H3109.467C14—C15—H20109.472
C2—C3—H4119.227C14—C15—H21109.469
C4—C3—H4119.232C14—C15—H22109.470
C3—C4—H5119.709H20—C15—H21109.471
C5—C4—H5119.710H20—C15—H22109.473
C5—C6—H6119.686H21—C15—H22109.472
C7—C6—H6119.692
C9—S2—C10—C11−99.27 (15)C3—C4—C5—C6−1.2 (4)
C10—S2—C9—S1−4.68 (19)C3—C4—C5—C8178.37 (19)
C10—S2—C9—N2176.19 (15)C4—C5—C6—C70.9 (4)
N2—N1—C8—C5179.48 (17)C4—C5—C8—N1−2.6 (4)
C8—N1—N2—C9−177.29 (18)C6—C5—C8—N1176.96 (19)
N1—N2—C9—S1179.41 (16)C8—C5—C6—C7−178.62 (18)
N1—N2—C9—S2−1.4 (3)C5—C6—C7—C2−0.3 (4)
C1—C2—C3—C4179.25 (19)S2—C10—C11—C1266.6 (2)
C1—C2—C7—C6−179.50 (19)C10—C11—C12—C13−178.90 (17)
C3—C2—C7—C6−0.1 (4)C11—C12—C13—C14178.41 (17)
C7—C2—C3—C4−0.2 (4)C12—C13—C14—C15178.99 (17)
C2—C3—C4—C50.8 (4)
D—H···AD—HH···AD···AD—H···A
N2—H9···S1i0.83 (3)2.56 (3)3.3760 (19)168 (2)
C1—H2···Cg1ii0.982.613.529 (3)157
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the C1C6 ring.

DHA DHHA D A DHA
N2H9S1i 0.83(3)2.56(3)3.3760(19)168(2)
C1H2Cg1ii 0.982.613.529(3)157

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Biological activity of palladium(II) and platinum(II) complexes of the acetone Schiff bases of S-methyl- and S-benzyldithiocarbazate and the X-ray crystal structure of the [Pd(asme)2] (asme=anionic form of the acetone Schiff base of S-methyldithiocarbazate) complex.

Authors:  Mohammad Akbar Ali; Aminul Huq Mirza; Raymond J Butcher; M T H Tarafder; Tan Boon Keat; A Manaf Ali
Journal:  J Inorg Biochem       Date:  2002-11-25       Impact factor: 4.155

3.  Benzyl 3-[(E,E)-3-phenyl-prop-2-enyl-idene]dithio-carbazate.

Authors:  M T H Tarafder; K A Crouse; M Toihidul Islam; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-10

4.  Methyl 3-[(E,E)-3-phenyl-prop-2-enyl-idene]dithio-carbazate.

Authors:  M T H Tarafder; Sultana Shakila Khan; M A A A A Islam; Lea Lorenzi; Ennio Zangrando
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-20
  4 in total

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