Literature DB >> 23424455

(Pyridin-4-yl)methyl N'-(3-phenyl-allyl-idene)hydrazinecarbodithio-ate.

May Lee Low1, Thahira Begum S A Ravoof, Mohamed Ibrahim Mohamed Tahir, Karen A Crouse, Edward R T Tiekink.   

Abstract

In the title compound, C(16)H(15)N(3)S(2), the central C(2)N(2)S(2) residue is planar (r.m.s. deviation = 0.045 Å) and the pyridyl and benzene rings are inclined and approximately coplanar to this plane, respectively [dihedral angles = 72.85 (9) and 10.73 (9)°], so that, overall, the mol-ecule adopts an L-shape. The conformation about each of the N=C [1.290 (3) Å] and C=C [1.340 (3) Å] bonds is E. Supra-molecular chains along [1-10] are stabilized by N-H⋯N(pyridine) hydrogen bonding and these are connected into a double layer that stacks along the c-axis direction by C-H⋯π(pyridine) inter-actions.

Entities:  

Year:  2013        PMID: 23424455      PMCID: PMC3569232          DOI: 10.1107/S1600536812051537

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to related Schiff bases of S-substituted dithio­carbaza­tes with cinnamaldehyde, see: Tarafder et al. (2008 ▶, 2010 ▶). For the corresponding metal complexes, see: Reza et al. (2012 ▶); Liu et al. (2009 ▶). For the biological activity of similar sulfur–nitro­gen-containing Schiff base derivatives, see: Maia et al. (2010 ▶); Pavan et al. (2010 ▶); Zhu et al. (2009 ▶). For the synthesis, see: Crouse et al. (2004 ▶); Khoo (2008 ▶); Tarafder et al. (2008 ▶, 2010 ▶).

Experimental

Crystal data

C16H15N3S2 M = 313.43 Triclinic, a = 5.3784 (5) Å b = 10.1570 (9) Å c = 14.5488 (17) Å α = 77.315 (9)° β = 84.735 (9)° γ = 78.193 (8)° V = 758.06 (13) Å3 Z = 2 Cu Kα radiation μ = 3.14 mm−1 T = 100 K 0.13 × 0.06 × 0.01 mm

Data collection

Oxford Diffraction Xcaliber Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.83, T max = 0.97 15664 measured reflections 2918 independent reflections 2469 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.115 S = 1.05 2918 reflections 193 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812051537/qm2090sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812051537/qm2090Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812051537/qm2090Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15N3S2Z = 2
Mr = 313.43F(000) = 328
Triclinic, P1Dx = 1.373 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54184 Å
a = 5.3784 (5) ÅCell parameters from 5833 reflections
b = 10.1570 (9) Åθ = 3–72°
c = 14.5488 (17) ŵ = 3.14 mm1
α = 77.315 (9)°T = 100 K
β = 84.735 (9)°Thin-plate, orange
γ = 78.193 (8)°0.13 × 0.06 × 0.01 mm
V = 758.06 (13) Å3
Oxford Diffraction Xcaliber Eos Gemini diffractometer2918 independent reflections
Radiation source: fine-focus sealed tube2469 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.045
Detector resolution: 16.1952 pixels mm-1θmax = 72.3°, θmin = 3.1°
ω scansh = −6→6
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −12→12
Tmin = 0.83, Tmax = 0.97l = −17→15
15664 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0669P)2 + 0.3038P] where P = (Fo2 + 2Fc2)/3
2918 reflections(Δ/σ)max < 0.001
193 parametersΔρmax = 0.42 e Å3
1 restraintΔρmin = −0.29 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.36876 (9)0.53086 (5)0.18295 (4)0.02532 (16)
S20.33320 (10)0.32045 (5)0.06781 (4)0.02701 (17)
N10.6775 (3)0.29601 (17)0.19095 (13)0.0256 (4)
H1n0.749 (4)0.2148 (14)0.1794 (18)0.031*
N20.7786 (3)0.34184 (17)0.25917 (13)0.0262 (4)
N3−0.1177 (4)1.01818 (18)0.16683 (15)0.0338 (5)
C10.4717 (4)0.3730 (2)0.14713 (15)0.0233 (4)
C20.9846 (4)0.2638 (2)0.29282 (16)0.0266 (5)
H21.05790.18460.26820.032*
C31.1038 (4)0.2962 (2)0.36748 (16)0.0284 (5)
H31.02950.37640.39090.034*
C41.3162 (4)0.2171 (2)0.40512 (16)0.0279 (5)
H41.38930.14050.37760.033*
C51.4484 (4)0.2350 (2)0.48372 (16)0.0284 (5)
C61.3649 (5)0.3430 (2)0.53137 (18)0.0370 (6)
H61.21390.40740.51330.044*
C71.4982 (5)0.3574 (3)0.60420 (19)0.0393 (6)
H71.44010.43230.63490.047*
C81.7160 (5)0.2633 (3)0.63253 (18)0.0368 (6)
H81.80740.27330.68260.044*
C91.8000 (4)0.1543 (3)0.58746 (18)0.0359 (5)
H91.94840.08890.60720.043*
C101.6683 (4)0.1405 (2)0.51347 (17)0.0312 (5)
H101.72830.06590.48270.037*
C110.1118 (4)0.6125 (2)0.10459 (17)0.0269 (5)
H11A0.17250.61640.03790.032*
H11B−0.02980.56120.11810.032*
C120.0263 (4)0.7559 (2)0.12385 (16)0.0262 (5)
C13−0.1950 (4)0.7908 (2)0.17696 (19)0.0357 (6)
H13−0.30220.72580.19980.043*
C14−0.2588 (4)0.9219 (2)0.1965 (2)0.0390 (6)
H14−0.41120.94410.23300.047*
C150.0961 (5)0.9839 (2)0.11574 (18)0.0345 (5)
H150.19991.05080.09400.041*
C160.1742 (4)0.8555 (2)0.09283 (17)0.0314 (5)
H160.32770.83610.05620.038*
U11U22U33U12U13U23
S10.0270 (3)0.0170 (3)0.0333 (3)0.00106 (19)−0.0078 (2)−0.0104 (2)
S20.0278 (3)0.0215 (3)0.0342 (3)−0.0011 (2)−0.0060 (2)−0.0124 (2)
N10.0275 (9)0.0184 (8)0.0315 (10)0.0004 (7)−0.0035 (8)−0.0100 (7)
N20.0260 (9)0.0226 (9)0.0312 (10)−0.0014 (7)−0.0049 (7)−0.0095 (7)
N30.0309 (10)0.0233 (9)0.0484 (13)0.0048 (7)−0.0124 (9)−0.0149 (9)
C10.0249 (10)0.0176 (9)0.0272 (11)−0.0021 (8)0.0002 (8)−0.0062 (8)
C20.0251 (10)0.0224 (10)0.0323 (12)−0.0021 (8)−0.0013 (9)−0.0078 (9)
C30.0292 (11)0.0234 (10)0.0334 (12)−0.0025 (8)−0.0023 (9)−0.0096 (9)
C40.0300 (11)0.0238 (10)0.0299 (12)−0.0020 (8)0.0003 (9)−0.0089 (9)
C50.0271 (11)0.0262 (11)0.0313 (12)−0.0045 (8)−0.0021 (9)−0.0051 (9)
C60.0370 (13)0.0302 (12)0.0429 (15)0.0047 (9)−0.0111 (11)−0.0122 (10)
C70.0419 (14)0.0341 (13)0.0436 (15)0.0009 (10)−0.0083 (11)−0.0166 (11)
C80.0345 (12)0.0433 (14)0.0341 (13)−0.0045 (10)−0.0093 (10)−0.0111 (11)
C90.0281 (11)0.0395 (13)0.0387 (14)0.0020 (9)−0.0057 (10)−0.0111 (11)
C100.0291 (11)0.0303 (11)0.0339 (13)−0.0007 (9)−0.0007 (9)−0.0108 (9)
C110.0268 (10)0.0201 (10)0.0344 (12)0.0004 (8)−0.0097 (9)−0.0077 (9)
C120.0270 (10)0.0198 (10)0.0320 (12)0.0022 (8)−0.0113 (9)−0.0081 (8)
C130.0260 (11)0.0314 (12)0.0542 (16)−0.0051 (9)−0.0020 (10)−0.0185 (11)
C140.0257 (11)0.0359 (13)0.0584 (17)0.0018 (9)−0.0017 (11)−0.0235 (12)
C150.0389 (13)0.0204 (10)0.0439 (14)−0.0034 (9)−0.0068 (11)−0.0060 (9)
C160.0328 (11)0.0230 (10)0.0363 (13)0.0005 (9)−0.0022 (10)−0.0071 (9)
S1—C11.760 (2)C7—C81.383 (3)
S1—C111.817 (2)C7—H70.9500
S2—C11.662 (2)C8—C91.385 (4)
N1—C11.342 (3)C8—H80.9500
N1—N21.379 (3)C9—C101.389 (3)
N1—H1n0.880 (10)C9—H90.9500
N2—C21.290 (3)C10—H100.9500
N3—C141.332 (3)C11—C121.514 (3)
N3—C151.337 (3)C11—H11A0.9900
C2—C31.439 (3)C11—H11B0.9900
C2—H20.9500C12—C131.385 (3)
C3—C41.340 (3)C12—C161.386 (3)
C3—H30.9500C13—C141.391 (3)
C4—C51.463 (3)C13—H130.9500
C4—H40.9500C14—H140.9500
C5—C101.398 (3)C15—C161.389 (3)
C5—C61.400 (3)C15—H150.9500
C6—C71.382 (3)C16—H160.9500
C6—H60.9500
C1—S1—C11101.51 (10)C9—C8—H8120.2
C1—N1—N2119.67 (17)C8—C9—C10120.2 (2)
C1—N1—H1n122.4 (17)C8—C9—H9119.9
N2—N1—H1n117.9 (17)C10—C9—H9119.9
C2—N2—N1114.56 (18)C9—C10—C5120.9 (2)
C14—N3—C15116.84 (19)C9—C10—H10119.6
N1—C1—S2121.98 (16)C5—C10—H10119.6
N1—C1—S1113.13 (16)C12—C11—S1105.44 (14)
S2—C1—S1124.88 (12)C12—C11—H11A110.7
N2—C2—C3120.4 (2)S1—C11—H11A110.7
N2—C2—H2119.8C12—C11—H11B110.7
C3—C2—H2119.8S1—C11—H11B110.7
C4—C3—C2122.2 (2)H11A—C11—H11B108.8
C4—C3—H3118.9C13—C12—C16117.4 (2)
C2—C3—H3118.9C13—C12—C11121.6 (2)
C3—C4—C5127.5 (2)C16—C12—C11121.0 (2)
C3—C4—H4116.3C12—C13—C14119.3 (2)
C5—C4—H4116.3C12—C13—H13120.3
C10—C5—C6117.9 (2)C14—C13—H13120.3
C10—C5—C4119.1 (2)N3—C14—C13123.6 (2)
C6—C5—C4123.0 (2)N3—C14—H14118.2
C7—C6—C5121.1 (2)C13—C14—H14118.2
C7—C6—H6119.4N3—C15—C16123.4 (2)
C5—C6—H6119.4N3—C15—H15118.3
C6—C7—C8120.2 (2)C16—C15—H15118.3
C6—C7—H7119.9C12—C16—C15119.4 (2)
C8—C7—H7119.9C12—C16—H16120.3
C7—C8—C9119.7 (2)C15—C16—H16120.3
C7—C8—H8120.2
C1—N1—N2—C2−176.15 (19)C8—C9—C10—C5−0.5 (4)
N2—N1—C1—S2−177.22 (15)C6—C5—C10—C9−0.5 (3)
N2—N1—C1—S12.5 (2)C4—C5—C10—C9179.6 (2)
C11—S1—C1—N1175.41 (16)C1—S1—C11—C12−174.77 (15)
C11—S1—C1—S2−4.84 (16)S1—C11—C12—C13−103.5 (2)
N1—N2—C2—C3−177.19 (18)S1—C11—C12—C1673.2 (2)
N2—C2—C3—C4179.2 (2)C16—C12—C13—C140.1 (4)
C2—C3—C4—C5−176.9 (2)C11—C12—C13—C14176.9 (2)
C3—C4—C5—C10179.6 (2)C15—N3—C14—C13−0.1 (4)
C3—C4—C5—C6−0.2 (4)C12—C13—C14—N30.0 (4)
C10—C5—C6—C71.3 (4)C14—N3—C15—C160.2 (4)
C4—C5—C6—C7−178.8 (2)C13—C12—C16—C150.0 (3)
C5—C6—C7—C8−1.1 (4)C11—C12—C16—C15−176.9 (2)
C6—C7—C8—C90.1 (4)N3—C15—C16—C12−0.1 (4)
C7—C8—C9—C100.8 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1n···N3i0.88 (2)2.02 (2)2.897 (3)172 (2)
C8—H8···Cg1ii0.952.923.701 (3)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N3,C12–C15 pyridyl ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1n⋯N3i 0.88 (2)2.02 (2)2.897 (3)172 (2)
C8—H8⋯Cg1ii 0.952.923.701 (3)141

Symmetry codes: (i) ; (ii) .

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1.  Crystal structure of 2-{[2-(3-phenyl-allyl-idene)hydrazin-1-yl]thio-carbonyl-sulfanylmeth-yl}pyridinium chloride.

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