Literature DB >> 10659856

A synthetic oscillatory network of transcriptional regulators.

M B Elowitz1, S Leibler.   

Abstract

Networks of interacting biomolecules carry out many essential functions in living cells, but the 'design principles' underlying the functioning of such intracellular networks remain poorly understood, despite intensive efforts including quantitative analysis of relatively simple systems. Here we present a complementary approach to this problem: the design and construction of a synthetic network to implement a particular function. We used three transcriptional repressor systems that are not part of any natural biological clock to build an oscillating network, termed the repressilator, in Escherichia coli. The network periodically induces the synthesis of green fluorescent protein as a readout of its state in individual cells. The resulting oscillations, with typical periods of hours, are slower than the cell-division cycle, so the state of the oscillator has to be transmitted from generation to generation. This artificial clock displays noisy behaviour, possibly because of stochastic fluctuations of its components. Such 'rational network design may lead both to the engineering of new cellular behaviours and to an improved understanding of naturally occurring networks.

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Year:  2000        PMID: 10659856     DOI: 10.1038/35002125

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  1004 in total

1.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

Authors:  T B Kepler; T C Elston
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Intrinsic noise in gene regulatory networks.

Authors:  M Thattai; A van Oudenaarden
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

3.  Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.

Authors:  A Becskei; B Séraphin; L Serrano
Journal:  EMBO J       Date:  2001-05-15       Impact factor: 11.598

4.  Frequency domain analysis of noise in autoregulated gene circuits.

Authors:  Michael L Simpson; Chris D Cox; Gary S Sayler
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-01       Impact factor: 11.205

5.  Closing the loop: the PmrA/PmrB two-component system negatively controls expression of its posttranscriptional activator PmrD.

Authors:  Akinori Kato; Tammy Latifi; Eduardo A Groisman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-03       Impact factor: 11.205

6.  On schemes of combinatorial transcription logic.

Authors:  Nicolas E Buchler; Ulrich Gerland; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-17       Impact factor: 11.205

7.  Directed evolution of a genetic circuit.

Authors:  Yohei Yokobayashi; Ron Weiss; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-25       Impact factor: 11.205

8.  An ensemble method for identifying regulatory circuits with special reference to the qa gene cluster of Neurospora crassa.

Authors:  D Battogtokh; D K Asch; M E Case; J Arnold; H-B Schuttler
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

9.  Design then mutate.

Authors:  Jeff Hasty
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-16       Impact factor: 11.205

10.  Ribozyme-based insulator parts buffer synthetic circuits from genetic context.

Authors:  Chunbo Lou; Brynne Stanton; Ying-Ja Chen; Brian Munsky; Christopher A Voigt
Journal:  Nat Biotechnol       Date:  2012-10-03       Impact factor: 54.908

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