Literature DB >> 8742743

SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields.

J Frank1, M Radermacher, P Penczek, J Zhu, Y Li, M Ladjadj, A Leith.   

Abstract

The SPIDER system has evolved into a comprehensive tool set for image processing, making use of modern graphics interfacing in the VMS and UNIX environment. SPIDER and WEB handle the complementary tasks of batch processing and visualization of the results. The emphasis of the SPIDER system remains in the area of single particle averaging and reconstruction, although a variety of other application areas have been added. Novel features are a suite of operations relating to the determination, modeling, and correction of the contrast transfer function and the availability of the entire documentation in hypertext format.

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Year:  1996        PMID： 8742743     DOI： 10.1006/jsbi.1996.0030

Source DB:  PubMed          Journal:  J Struct Biol        ISSN： 1047-8477            Impact factor:   2.867


  989 in total

Review 1.  Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs.

Authors:  T S Baker; N H Olson; S D Fuller
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

2.  The DnaB.DnaC complex: a structure based on dimers assembled around an occluded channel.

Authors:  M Bárcena; T Ruiz; L E Donate; S E Brown; N E Dixon; M Radermacher; J M Carazo
Journal:  EMBO J       Date:  2001-03-15       Impact factor: 11.598

3.  Three-dimensional reconstruction of a recombinant influenza virus ribonucleoprotein particle.

Authors:  J Martín-Benito; E Area; J Ortega; O Llorca; J M Valpuesta; J L Carrascosa; J Ortín
Journal:  EMBO Rep       Date:  2001-04       Impact factor: 8.807

4.  The 3.7 A projection map of the glycerol facilitator GlpF: a variant of the aquaporin tetramer.

Authors:  T Braun; A Philippsen; S Wirtz; M J Borgnia; P Agre; W Kühlbrandt; A Engel; H Stahlberg
Journal:  EMBO Rep       Date:  2000-08       Impact factor: 8.807

5.  Rotational symmetry of the C ring and a mechanism for the flagellar rotary motor.

Authors:  D R Thomas; D G Morgan; D J DeRosier
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

6.  Domain structure of secretin PulD revealed by limited proteolysis and electron microscopy.

Authors:  N Nouwen; H Stahlberg; A P Pugsley; A Engel
Journal:  EMBO J       Date:  2000-05-15       Impact factor: 11.598

7.  Membrane association induces a conformational change in the Ebola virus matrix protein.

Authors:  S Scianimanico; G Schoehn; J Timmins; R H Ruigrok; H D Klenk; W Weissenhorn
Journal:  EMBO J       Date:  2000-12-15       Impact factor: 11.598

8.  Cryo-electron microscopy structure of an SH3 amyloid fibril and model of the molecular packing.

Authors:  J L Jiménez; J I Guijarro; E Orlova; J Zurdo; C M Dobson; M Sunde; H R Saibil
Journal:  EMBO J       Date:  1999-02-15       Impact factor: 11.598

9.  Eukaryotic chaperonin CCT stabilizes actin and tubulin folding intermediates in open quasi-native conformations.

Authors:  O Llorca; J Martín-Benito; M Ritco-Vonsovici; J Grantham; G M Hynes; K R Willison; J L Carrascosa; J M Valpuesta
Journal:  EMBO J       Date:  2000-11-15       Impact factor: 11.598

10.  Three-dimensional structure of the lithostathine protofibril, a protein involved in Alzheimer's disease.

Authors:  C Grégoire; S Marco; J Thimonier; L Duplan; E Laurine; J P Chauvin; B Michel; V Peyrot; J M Verdier
Journal:  EMBO J       Date:  2001-07-02       Impact factor: 11.598
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