Literature DB >> 20961123

Photocaged morpholino oligomers for the light-regulation of gene function in zebrafish and Xenopus embryos.

Alexander Deiters1, R Aaron Garner, Hrvoje Lusic, Jeane M Govan, Mike Dush, Nanette M Nascone-Yoder, Jeffrey A Yoder.   

Abstract

Morpholino oligonucleotides, or morpholinos, have emerged as powerful antisense reagents for evaluating gene function in both in vitro and in vivo contexts. However, the constitutive activity of these reagents limits their utility for applications that require spatiotemporal control, such as tissue-specific gene disruptions in embryos. Here we report a novel and efficient synthetic route for incorporating photocaged monomeric building blocks directly into morpholino oligomers and demonstrate the utility of these caged morpholinos in the light-activated control of gene function in both cell culture and living embryos. We demonstrate that a caged morpholino that targets enhanced green fluorescent protein (EGFP) disrupts EGFP production only after exposure to UV light in both transfected cells and living zebrafish (Danio rerio) and Xenopus frog embryos. Finally, we show that a caged morpholino targeting chordin, a zebrafish gene that yields a distinct phenotype when functionally disrupted by conventional morpholinos, elicits a chordin phenotype in a UV-dependent manner. Our results suggest that photocaged morpholinos are readily synthesized and highly efficacious tools for light-activated spatiotemporal control of gene expression in multiple contexts.

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Year:  2010        PMID: 20961123      PMCID: PMC3001396          DOI: 10.1021/ja1053863

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  28 in total

Review 1.  Morpholino antisense oligomers: the case for an RNase H-independent structural type.

Authors:  J Summerton
Journal:  Biochim Biophys Acta       Date:  1999-12-10

2.  Photoactivated gene expression for cell fate mapping and cell manipulation.

Authors:  J Minden; R Namba; J Mergliano; S Cambridge
Journal:  Sci STKE       Date:  2000-12-12

3.  Light-controlled gene silencing in zebrafish embryos.

Authors:  Ilya A Shestopalov; Surajit Sinha; James K Chen
Journal:  Nat Chem Biol       Date:  2007-08-23       Impact factor: 15.040

Review 4.  Controlling morpholino experiments: don't stop making antisense.

Authors:  Judith S Eisen; James C Smith
Journal:  Development       Date:  2008-04-09       Impact factor: 6.868

5.  Segregation of fate during cleavage of frog (Xenopus laevis) blastomeres.

Authors:  S A Moody; M J Kline
Journal:  Anat Embryol (Berl)       Date:  1990

6.  Effective targeted gene 'knockdown' in zebrafish.

Authors:  A Nasevicius; S C Ekker
Journal:  Nat Genet       Date:  2000-10       Impact factor: 38.330

7.  Photobiological effects of UVA and UVB light in zebrafish embryos: evidence for a competent photorepair system.

Authors:  Qiaoxiang Dong; Kurt Svoboda; Terrence R Tiersch; W Todd Monroe
Journal:  J Photochem Photobiol B       Date:  2007-07-21       Impact factor: 6.252

8.  Photoinduced RNA interference using DMNPE-caged 2'-deoxy-2'-fluoro substituted nucleic acids in vitro and in vivo.

Authors:  Richard A Blidner; Kurt R Svoboda; Robert P Hammer; W Todd Monroe
Journal:  Mol Biosyst       Date:  2008-03-31

9.  miR-451 regulates zebrafish erythroid maturation in vivo via its target gata2.

Authors:  Luke Pase; Judith E Layton; Wigard P Kloosterman; Duncan Carradice; Peter M Waterhouse; Graham J Lieschke
Journal:  Blood       Date:  2008-10-10       Impact factor: 22.113

10.  Versatile synthesis and rational design of caged morpholinos.

Authors:  Xiaohu Ouyang; Ilya A Shestopalov; Surajit Sinha; Genhua Zheng; Cameron L W Pitt; Wen-Hong Li; Andrew J Olson; James K Chen
Journal:  J Am Chem Soc       Date:  2009-09-23       Impact factor: 15.419

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  38 in total

1.  Cyclic caged morpholinos: conformationally gated probes of embryonic gene function.

Authors:  Sayumi Yamazoe; Ilya A Shestopalov; Elayne Provost; Steven D Leach; James K Chen
Journal:  Angew Chem Int Ed Engl       Date:  2012-06-11       Impact factor: 15.336

Review 2.  Optochemical Control of Biological Processes in Cells and Animals.

Authors:  Nicholas Ankenbruck; Taylor Courtney; Yuta Naro; Alexander Deiters
Journal:  Angew Chem Int Ed Engl       Date:  2018-02-01       Impact factor: 15.336

3.  Illuminating developmental biology through photochemistry.

Authors:  Lukasz Kowalik; James K Chen
Journal:  Nat Chem Biol       Date:  2017-05-17       Impact factor: 15.040

4.  Visible-to-NIR-Light Activated Release: From Small Molecules to Nanomaterials.

Authors:  Roy Weinstain; Tomáš Slanina; Dnyaneshwar Kand; Petr Klán
Journal:  Chem Rev       Date:  2020-10-30       Impact factor: 60.622

5.  A photoactivatable small-molecule inhibitor for light-controlled spatiotemporal regulation of Rho kinase in live embryos.

Authors:  Allison R Morckel; Hrvoje Lusic; Laila Farzana; Jeffrey A Yoder; Alexander Deiters; Nanette M Nascone-Yoder
Journal:  Development       Date:  2012-01       Impact factor: 6.868

6.  Photochemical control of DNA decoy function enables precise regulation of nuclear factor κB activity.

Authors:  Jeane M Govan; Mark O Lively; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2011-07-29       Impact factor: 15.419

7.  Stabilization and photochemical regulation of antisense agents through PEGylation.

Authors:  Jeane M Govan; Andrew L McIver; Alexander Deiters
Journal:  Bioconjug Chem       Date:  2011-09-30       Impact factor: 4.774

Review 8.  Cellular and molecular mechanisms underlying blood vessel lumen formation.

Authors:  Marta S Charpentier; Frank L Conlon
Journal:  Bioessays       Date:  2013-12-09       Impact factor: 4.345

9.  Combinatorial control of gene function with wavelength-selective caged morpholinos.

Authors:  Sankha Pattanayak; Luis Angel Vázquez-Maldonado; Alexander Deiters; James K Chen
Journal:  Methods Enzymol       Date:  2019-04-25       Impact factor: 1.600

10.  Synthesis of a photocaged tamoxifen for light-dependent activation of Cre-ER recombinase-driven gene modification.

Authors:  Matthew A Inlay; Veronica Choe; Sophia Bharathi; Nathaniel B Fernhoff; James R Baker; Irving L Weissman; Seok Ki Choi
Journal:  Chem Commun (Camb)       Date:  2013-05-28       Impact factor: 6.222

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