Literature DB >> 28514427

Illuminating developmental biology through photochemistry.

Lukasz Kowalik1,2, James K Chen1,3.   

Abstract

Developmental biology has been continually shaped by technological advances, evolving from a descriptive science into one immersed in molecular and cellular mechanisms. Most recently, genome sequencing and 'omics' profiling have provided developmental biologists with a wealth of genetic and biochemical information; however, fully translating this knowledge into functional understanding will require new experimental capabilities. Photoactivatable probes have emerged as particularly valuable tools for investigating developmental mechanisms, as they can enable rapid, specific manipulations of DNA, RNA, proteins, and cells with spatiotemporal precision. In this Perspective, we describe optochemical and optogenetic systems that have been applied in multicellular organisms, insights gained through the use of these probes, and their current limitations. We also suggest how chemical biologists can expand the reach of photoactivatable technologies and bring new depth to our understanding of organismal development.

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Year:  2017        PMID: 28514427      PMCID: PMC5511696          DOI: 10.1038/nchembio.2369

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  92 in total

1.  Cell tracking using a photoconvertible fluorescent protein.

Authors:  Kohei Hatta; Hitomi Tsujii; Tomomi Omura
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

2.  Structural basis of a phototropin light switch.

Authors:  Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

3.  Engineering of a red-light-activated human cAMP/cGMP-specific phosphodiesterase.

Authors:  Carlos Gasser; Sandra Taiber; Chen-Min Yeh; Charlotte Helene Wittig; Peter Hegemann; Soojin Ryu; Frank Wunder; Andreas Möglich
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-02       Impact factor: 11.205

Review 4.  Morpholinos: Antisense and Sensibility.

Authors:  Martin Blum; Edward M De Robertis; John B Wallingford; Christof Niehrs
Journal:  Dev Cell       Date:  2015-10-26       Impact factor: 12.270

5.  General method for regulating protein stability with light.

Authors:  Kimberly M Bonger; Rishi Rakhit; Alexander Y Payumo; James K Chen; Thomas J Wandless
Journal:  ACS Chem Biol       Date:  2013-11-08       Impact factor: 5.100

6.  A complex choreography of cell movements shapes the vertebrate eye.

Authors:  Kristen M Kwan; Hideo Otsuna; Hinako Kidokoro; Keith R Carney; Yukio Saijoh; Chi-Bin Chien
Journal:  Development       Date:  2012-01       Impact factor: 6.868

7.  A genetically encoded photoactivatable Rac controls the motility of living cells.

Authors:  Yi I Wu; Daniel Frey; Oana I Lungu; Angelika Jaehrig; Ilme Schlichting; Brian Kuhlman; Klaus M Hahn
Journal:  Nature       Date:  2009-08-19       Impact factor: 49.962

8.  A red/far-red light-responsive bi-stable toggle switch to control gene expression in mammalian cells.

Authors:  Konrad Müller; Raphael Engesser; Stéphanie Metzger; Simon Schulz; Michael M Kämpf; Moritz Busacker; Thorsten Steinberg; Pascal Tomakidi; Martin Ehrbar; Ferenc Nagy; Jens Timmer; Matias D Zubriggen; Wilfried Weber
Journal:  Nucleic Acids Res       Date:  2013-01-25       Impact factor: 16.971

9.  Molecular identification of spadetail: regulation of zebrafish trunk and tail mesoderm formation by T-box genes.

Authors:  K J Griffin; S L Amacher; C B Kimmel; D Kimelman
Journal:  Development       Date:  1998-09       Impact factor: 6.868

10.  Optogenetic Control of Gene Expression in Drosophila.

Authors:  Yick-Bun Chan; Olga V Alekseyenko; Edward A Kravitz
Journal:  PLoS One       Date:  2015-09-18       Impact factor: 3.240

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  19 in total

Review 1.  Development of photolabile protecting groups and their application to the optochemical control of cell signaling.

Authors:  Anirban Bardhan; Alexander Deiters
Journal:  Curr Opin Struct Biol       Date:  2019-05-25       Impact factor: 6.809

2.  Cell-Lineage Tracing in Zebrafish Embryos with an Expanded Genetic Code.

Authors:  Wes Brown; Jihe Liu; Michael Tsang; Alexander Deiters
Journal:  Chembiochem       Date:  2018-05-18       Impact factor: 3.164

3.  Spatiotemporal Control of CRISPR/Cas9 Function in Cells and Zebrafish using Light-Activated Guide RNA.

Authors:  Wenyuan Zhou; Wes Brown; Anirban Bardhan; Michael Delaney; Amber S Ilk; Randy R Rauen; Shoeb I Kahn; Michael Tsang; Alexander Deiters
Journal:  Angew Chem Int Ed Engl       Date:  2020-04-06       Impact factor: 15.336

4.  Visible-to-NIR-Light Activated Release: From Small Molecules to Nanomaterials.

Authors:  Roy Weinstain; Tomáš Slanina; Dnyaneshwar Kand; Petr Klán
Journal:  Chem Rev       Date:  2020-10-30       Impact factor: 60.622

Review 5.  The Molecular Industrial Revolution: Automated Synthesis of Small Molecules.

Authors:  Melanie Trobe; Martin D Burke
Journal:  Angew Chem Int Ed Engl       Date:  2018-03-07       Impact factor: 15.336

Review 6.  Genetic Code Expansion in Animals.

Authors:  Wes Brown; Jihe Liu; Alexander Deiters
Journal:  ACS Chem Biol       Date:  2018-09-05       Impact factor: 5.100

7.  Spatiotemporal Control of Biology: Synthetic Photochemistry Toolbox with Far-Red and Near-Infrared Light.

Authors:  Shang Jia; Ellen M Sletten
Journal:  ACS Chem Biol       Date:  2021-09-13       Impact factor: 5.100

8.  Breaking photoswitch activation depth limit using ionising radiation stimuli adapted to clinical application.

Authors:  Alban Guesdon-Vennerie; Patrick Couvreur; Fatoumia Ali; Frédéric Pouzoulet; Christophe Roulin; Immaculada Martínez-Rovira; Guillaume Bernadat; François-Xavier Legrand; Claudie Bourgaux; Cyril Lucien Mazars; Sergio Marco; Sylvain Trépout; Simona Mura; Sébastien Mériaux; Guillaume Bort
Journal:  Nat Commun       Date:  2022-07-14       Impact factor: 17.694

9.  Design, synthesis and activity of light deactivatable microRNA inhibitor.

Authors:  Hao Yan; Umesh Bhattarai; Yabin Song; Fu-Sen Liang
Journal:  Bioorg Chem       Date:  2018-07-02       Impact factor: 5.275

Review 10.  Targeting drug delivery with light: A highly focused approach.

Authors:  Teresa L Rapp; Cole A DeForest
Journal:  Adv Drug Deliv Rev       Date:  2021-01-22       Impact factor: 15.470

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