Literature DB >> 17717538

Light-controlled gene silencing in zebrafish embryos.

Ilya A Shestopalov1, Surajit Sinha, James K Chen.   

Abstract

Functional genomic studies in zebrafish frequently use synthetic oligonucleotides called morpholinos that block RNA splicing or translation. However, the constitutive activity of these reagents limits their experimental utility. We report here the synthesis of a photoactivatable morpholino targeting the no tail (ntl) gene. This caged reagent permits spatiotemporal gene regulation in vivo and the photochemical generation of functionally mosaic organisms.

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Year:  2007        PMID: 17717538     DOI: 10.1038/nchembio.2007.30

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  84 in total

1.  Gene knockdown by morpholino-modified oligonucleotides in the zebrafish (Danio rerio) model: applications for developmental toxicology.

Authors:  Alicia R Timme-Laragy; Sibel I Karchner; Mark E Hahn
Journal:  Methods Mol Biol       Date:  2012

2.  Cyclic caged morpholinos: conformationally gated probes of embryonic gene function.

Authors:  Sayumi Yamazoe; Ilya A Shestopalov; Elayne Provost; Steven D Leach; James K Chen
Journal:  Angew Chem Int Ed Engl       Date:  2012-06-11       Impact factor: 15.336

3.  Efficient shRNA-mediated inhibition of gene expression in zebrafish.

Authors:  Gianluca De Rienzo; Jennifer H Gutzman; Hazel Sive
Journal:  Zebrafish       Date:  2012-07-12       Impact factor: 1.985

4.  Two-photon-based photoactivation in live zebrafish embryos.

Authors:  Niva Russek-Blum; Helit Nabel-Rosen; Gil Levkowitz
Journal:  J Vis Exp       Date:  2010-12-24       Impact factor: 1.355

Review 5.  Reproductive and developmental toxicity of dioxin in fish.

Authors:  Tisha C King-Heiden; Vatsal Mehta; Kong M Xiong; Kevin A Lanham; Dagmara S Antkiewicz; Alissa Ganser; Warren Heideman; Richard E Peterson
Journal:  Mol Cell Endocrinol       Date:  2011-09-21       Impact factor: 4.102

6.  Light-dependent RNA interference with nucleobase-caged siRNAs.

Authors:  Vera Mikat; Alexander Heckel
Journal:  RNA       Date:  2007-10-19       Impact factor: 4.942

7.  Light-regulated RNA-small molecule interactions.

Authors:  Douglas D Young; Alexander Deiters
Journal:  Chembiochem       Date:  2008-05-23       Impact factor: 3.164

Review 8.  Chemical technologies for probing embryonic development.

Authors:  Ilya A Shestopalov; James K Chen
Journal:  Chem Soc Rev       Date:  2008-05-07       Impact factor: 54.564

9.  Combinatorial control of gene function with wavelength-selective caged morpholinos.

Authors:  Sankha Pattanayak; Luis Angel Vázquez-Maldonado; Alexander Deiters; James K Chen
Journal:  Methods Enzymol       Date:  2019-04-25       Impact factor: 1.600

10.  Versatile synthesis and rational design of caged morpholinos.

Authors:  Xiaohu Ouyang; Ilya A Shestopalov; Surajit Sinha; Genhua Zheng; Cameron L W Pitt; Wen-Hong Li; Andrew J Olson; James K Chen
Journal:  J Am Chem Soc       Date:  2009-09-23       Impact factor: 15.419

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