Literature DB >> 20953173

Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments.

Jan Lipfert1, Jacob W J Kerssemakers, Tessa Jager, Nynke H Dekker.   

Abstract

We introduce magnetic torque tweezers, which enable direct single-molecule measurements of torque. Our measurements of the effective torsional stiffness C of dsDNA indicated a substantial force dependence, with C = approximately 40 nm at low forces up to C = approximately 100 nm at high forces. The initial torsional stiffness of RecA filaments was nearly twofold larger than that for dsDNA, yet at moderate torques further build-up of torsional strain was prevented.

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Year:  2010        PMID: 20953173     DOI: 10.1038/nmeth.1520

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  26 in total

1.  Magnetic tweezers: micromanipulation and force measurement at the molecular level.

Authors:  Charlie Gosse; Vincent Croquette
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

2.  Twisting and untwisting a single DNA molecule covered by RecA protein.

Authors:  Renaud Fulconis; Aurélien Bancaud; Jean-Francois Allemand; Vincent Croquette; Marie Dutreix; Jean-Louis Viovy
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

3.  Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB.

Authors:  Daniel A Koster; Vincent Croquette; Cees Dekker; Stewart Shuman; Nynke H Dekker
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

Review 4.  Direct measurement of torque in an optical trap and its application to double-strand DNA.

Authors:  László Oroszi; Péter Galajda; Huba Kirei; Sándor Bottka; Pál Ormos
Journal:  Phys Rev Lett       Date:  2006-08-01       Impact factor: 9.161

5.  Magnetic tweezers measurement of single molecule torque.

Authors:  Alfredo Celedon; Ilana M Nodelman; Bridget Wildt; Rohit Dewan; Peter Searson; Denis Wirtz; Gregory D Bowman; Sean X Sun
Journal:  Nano Lett       Date:  2009-04       Impact factor: 11.189

6.  Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures.

Authors:  Zhucheng Chen; Haijuan Yang; Nikola P Pavletich
Journal:  Nature       Date:  2008-05-22       Impact factor: 49.962

7.  Dynamics of phosphodiester synthesis by DNA ligase.

Authors:  Aurélien Crut; Pravin A Nair; Daniel A Koster; Stewart Shuman; Nynke H Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-05       Impact factor: 11.205

Review 8.  Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy.

Authors:  Keir C Neuman; Attila Nagy
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

9.  Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules.

Authors:  Scott Forth; Christopher Deufel; Maxim Y Sheinin; Bryan Daniels; James P Sethna; Michelle D Wang
Journal:  Phys Rev Lett       Date:  2008-04-08       Impact factor: 9.161

10.  Torsional directed walks, entropic elasticity, and DNA twist stiffness.

Authors:  J D Moroz; P Nelson
Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-23       Impact factor: 11.205

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  76 in total

1.  Competition between curls and plectonemes near the buckling transition of stretched supercoiled DNA.

Authors:  John F Marko; Sébastien Neukirch
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-01-11

2.  Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA.

Authors:  Florian C Oberstrass; Louis E Fernandes; Zev Bryant
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

3.  Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA.

Authors:  Jan Lipfert; Gary M Skinner; Johannes M Keegstra; Toivo Hensgens; Tessa Jager; David Dulin; Mariana Köber; Zhongbo Yu; Serge P Donkers; Fang-Chieh Chou; Rhiju Das; Nynke H Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

4.  Dynamics of equilibrium folding and unfolding transitions of titin immunoglobulin domain under constant forces.

Authors:  Hu Chen; Guohua Yuan; Ricksen S Winardhi; Mingxi Yao; Ionel Popa; Julio M Fernandez; Jie Yan
Journal:  J Am Chem Soc       Date:  2015-03-09       Impact factor: 15.419

5.  Annealed random copolymer model of the B-Z transition in DNA: torsional responses.

Authors:  Ah-Young Kwon; Nam-Kyung Lee; Seok-Cheol Hong; Julien Fierling; Albert Johner
Journal:  Biophys J       Date:  2015-05-19       Impact factor: 4.033

6.  DNA supercoiling: a regulatory signal for the λ repressor.

Authors:  Yue Ding; Carlo Manzo; Geraldine Fulcrand; Fenfei Leng; David Dunlap; Laura Finzi
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-15       Impact factor: 11.205

7.  Thermodynamics of long supercoiled molecules: insights from highly efficient Monte Carlo simulations.

Authors:  Thibaut Lepage; François Képès; Ivan Junier
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

8.  Twist-bend coupling and the statistical mechanics of the twistable wormlike-chain model of DNA: Perturbation theory and beyond.

Authors:  Stefanos K Nomidis; Enrico Skoruppa; Enrico Carlon; John F Marko
Journal:  Phys Rev E       Date:  2019-03       Impact factor: 2.529

9.  DNA elasticity from coarse-grained simulations: The effect of groove asymmetry.

Authors:  Enrico Skoruppa; Michiel Laleman; Stefanos K Nomidis; Enrico Carlon
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

Review 10.  Force probing of individual molecules inside the living cell is now a reality.

Authors:  Lene B Oddershede
Journal:  Nat Chem Biol       Date:  2012-11       Impact factor: 15.040

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