Literature DB >> 9405627

Torsional directed walks, entropic elasticity, and DNA twist stiffness.

J D Moroz1, P Nelson.   

Abstract

DNA and other biopolymers differ from classical polymers because of their torsional stiffness. This property changes the statistical character of their conformations under tension from a classical random walk to a problem we call the "torsional directed walk." Motivated by a recent experiment on single lambda-DNA molecules [Strick, T. R., Allemand, J.-F., Bensimon, D., Bensimon, A. & Croquette, V. (1996) Science 271, 1835-1837], we formulate the torsional directed walk problem and solve it analytically in the appropriate force regime. Our technique affords a direct physical determination of the microscopic twist stiffness C and twist-stretch coupling D relevant for DNA functionality. The theory quantitatively fits existing experimental data for relative extension as a function of overtwist over a wide range of applied force; fitting to the experimental data yields the numerical values C = 120 nm and D = 50 nm. Future experiments will refine these values. We also predict that the phenomenon of reduction of effective twist stiffness by bend fluctuations should be testable in future single-molecule experiments, and we give its analytic form.

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Year:  1997        PMID: 9405627      PMCID: PMC25005          DOI: 10.1073/pnas.94.26.14418

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

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Authors:  S B Smith; L Finzi; C Bustamante
Journal:  Science       Date:  1992-11-13       Impact factor: 47.728

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Journal:  Methods Enzymol       Date:  1992       Impact factor: 1.600

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Journal:  Biopolymers       Date:  1990       Impact factor: 2.505

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Authors:  A V Vologodskii; J F Marko
Journal:  Biophys J       Date:  1997-07       Impact factor: 4.033

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Journal:  Annu Rev Biophys Biophys Chem       Date:  1988

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Authors:  C Bustamante; J F Marko; E D Siggia; S Smith
Journal:  Science       Date:  1994-09-09       Impact factor: 47.728

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Journal:  Cold Spring Harb Symp Quant Biol       Date:  1983

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Authors:  D Shore; R L Baldwin
Journal:  J Mol Biol       Date:  1983-11-15       Impact factor: 5.469

9.  The helicity of DNA in complexes with recA protein.

Authors:  A Stasiak; E Di Capua
Journal:  Nature       Date:  1982-09-09       Impact factor: 49.962

10.  The pitch of chromatin DNA is reflected in its nucleotide sequence.

Authors:  E N Trifonov; J L Sussman
Journal:  Proc Natl Acad Sci U S A       Date:  1980-07       Impact factor: 11.205

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  62 in total

1.  Transport of torsional stress in DNA.

Authors:  P Nelson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  Monte Carlo implementation of supercoiled double-stranded DNA.

Authors:  Z Yang; Z Haijun; O Y Zhong-Can
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

3.  Analytical description of extension, torque, and supercoiling radius of a stretched twisted DNA.

Authors:  Sébastien Neukirch; John F Marko
Journal:  Phys Rev Lett       Date:  2011-04-01       Impact factor: 9.161

4.  Competition between curls and plectonemes near the buckling transition of stretched supercoiled DNA.

Authors:  John F Marko; Sébastien Neukirch
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-01-11

5.  Revisiting polymer statistical physics to account for the presence of long-range-correlated structural disorder in 2D DNA chains.

Authors:  J Moukhtar; C Vaillant; B Audit; A Arneodo
Journal:  Eur Phys J E Soft Matter       Date:  2011-11-16       Impact factor: 1.890

6.  Effect of spontaneous twist on DNA minicircles.

Authors:  Shlomi Medalion; David A Kessler; Yitzhak Rabin
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

7.  Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments.

Authors:  Jan Lipfert; Jacob W J Kerssemakers; Tessa Jager; Nynke H Dekker
Journal:  Nat Methods       Date:  2010-10-17       Impact factor: 28.547

8.  Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA.

Authors:  Jan Lipfert; Gary M Skinner; Johannes M Keegstra; Toivo Hensgens; Tessa Jager; David Dulin; Mariana Köber; Zhongbo Yu; Serge P Donkers; Fang-Chieh Chou; Rhiju Das; Nynke H Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

9.  Braiding DNA: experiments, simulations, and models.

Authors:  G Charvin; A Vologodskii; D Bensimon; V Croquette
Journal:  Biophys J       Date:  2005-03-18       Impact factor: 4.033

10.  Defect-facilitated buckling in supercoiled double-helix DNA.

Authors:  Sumitabha Brahmachari; Andrew Dittmore; Yasuharu Takagi; Keir C Neuman; John F Marko
Journal:  Phys Rev E       Date:  2018-02       Impact factor: 2.529

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