Literature DB >> 19301859

Magnetic tweezers measurement of single molecule torque.

Alfredo Celedon1, Ilana M Nodelman, Bridget Wildt, Rohit Dewan, Peter Searson, Denis Wirtz, Gregory D Bowman, Sean X Sun.   

Abstract

Torsional stress in linear biopolymers such as DNA and chromatin has important consequences for nanoscale biological processes. We have developed a new method to directly measure torque on single molecules. Using a cylindrical magnet, we manipulate a novel probe consisting of a nanorod with a 0.1 microm ferromagnetic segment coupled to a magnetic bead. We achieve controlled introduction of turns into the molecule and precise measurement of torque and molecule extension as a function of the number of turns at low pulling force. We show torque measurement of single DNA molecules and demonstrate for the first time measurements of single chromatin fibers.

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Year:  2009        PMID: 19301859      PMCID: PMC4823137          DOI: 10.1021/nl900631w

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  23 in total

1.  Magnetic tweezers: micromanipulation and force measurement at the molecular level.

Authors:  Charlie Gosse; Vincent Croquette
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

2.  Promoter unwinding and promoter clearance by RNA polymerase: detection by single-molecule DNA nanomanipulation.

Authors:  Andrey Revyakin; Richard H Ebright; Terence R Strick
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-22       Impact factor: 11.205

3.  Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB.

Authors:  Daniel A Koster; Vincent Croquette; Cees Dekker; Stewart Shuman; Nynke H Dekker
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

4.  Structural plasticity of single chromatin fibers revealed by torsional manipulation.

Authors:  Aurélien Bancaud; Natalia Conde e Silva; Maria Barbi; Gaudeline Wagner; Jean-François Allemand; Julien Mozziconacci; Christophe Lavelle; Vincent Croquette; Jean-Marc Victor; Ariel Prunell; Jean-Louis Viovy
Journal:  Nat Struct Mol Biol       Date:  2006-04-16       Impact factor: 15.369

5.  Mechanochemical analysis of DNA gyrase using rotor bead tracking.

Authors:  Jeff Gore; Zev Bryant; Michael D Stone; Marcelo Nöllmann; Nicholas R Cozzarelli; Carlos Bustamante
Journal:  Nature       Date:  2006-01-05       Impact factor: 49.962

Review 6.  Direct measurement of torque in an optical trap and its application to double-strand DNA.

Authors:  László Oroszi; Péter Galajda; Huba Kirei; Sándor Bottka; Pál Ormos
Journal:  Phys Rev Lett       Date:  2006-08-01       Impact factor: 9.161

7.  Micromanipulation studies of chromatin fibers in Xenopus egg extracts reveal ATP-dependent chromatin assembly dynamics.

Authors:  Jie Yan; Thomas J Maresca; Dunja Skoko; Christian D Adams; Botao Xiao; Morten O Christensen; Rebecca Heald; John F Marko
Journal:  Mol Biol Cell       Date:  2006-11-15       Impact factor: 4.138

8.  Torque and dynamics of linking number relaxation in stretched supercoiled DNA.

Authors:  John F Marko
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-08-29

9.  Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules.

Authors:  Scott Forth; Christopher Deufel; Maxim Y Sheinin; Bryan Daniels; James P Sethna; Michelle D Wang
Journal:  Phys Rev Lett       Date:  2008-04-08       Impact factor: 9.161

10.  The functional response of upstream DNA to dynamic supercoiling in vivo.

Authors:  Fedor Kouzine; Suzanne Sanford; Zichrini Elisha-Feil; David Levens
Journal:  Nat Struct Mol Biol       Date:  2008-01-13       Impact factor: 15.369

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  42 in total

1.  Focal Adhesion Induction at the Tip of a Functionalized Nanoelectrode.

Authors:  Daniela E Fuentes; Chilman Bae; Peter J Butler
Journal:  Cell Mol Bioeng       Date:  2011-12       Impact factor: 2.321

2.  Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA.

Authors:  Florian C Oberstrass; Louis E Fernandes; Zev Bryant
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

3.  Magnetic manipulation of nanorods in the nucleus of living cells.

Authors:  Alfredo Celedon; Christopher M Hale; Denis Wirtz
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

4.  Multifunctional magnetic rotator for micro and nanorheological studies.

Authors:  Alexander Tokarev; Alexey Aprelev; Mikhail N Zakharov; Guzeliya Korneva; Yury Gogotsi; Konstantin G Kornev
Journal:  Rev Sci Instrum       Date:  2012-06       Impact factor: 1.523

5.  Quantitative guidelines for force calibration through spectral analysis of magnetic tweezers data.

Authors:  Aartjan J W te Velthuis; Jacob W J Kerssemakers; Jan Lipfert; Nynke H Dekker
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

6.  Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments.

Authors:  Jan Lipfert; Jacob W J Kerssemakers; Tessa Jager; Nynke H Dekker
Journal:  Nat Methods       Date:  2010-10-17       Impact factor: 28.547

7.  Twist propagation in dinucleosome arrays.

Authors:  Irina V Dobrovolskaia; Martin Kenward; Gaurav Arya
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

8.  Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA.

Authors:  Jan Lipfert; Gary M Skinner; Johannes M Keegstra; Toivo Hensgens; Tessa Jager; David Dulin; Mariana Köber; Zhongbo Yu; Serge P Donkers; Fang-Chieh Chou; Rhiju Das; Nynke H Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

9.  Torsion stiffness of a protein pair determined by magnetic particles.

Authors:  X J A Janssen; J M van Noorloos; A Jacob; L J van Ijzendoorn; A M de Jong; M W J Prins
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

10.  Transcription within condensed chromatin: Steric hindrance facilitates elongation.

Authors:  Christophe Bécavin; Maria Barbi; Jean-Marc Victor; Annick Lesne
Journal:  Biophys J       Date:  2010-03-03       Impact factor: 4.033

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