Literature DB >> 18511917

Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy.

Keir C Neuman1, Attila Nagy.   

Abstract

Single-molecule force spectroscopy has emerged as a powerful tool to investigate the forces and motions associated with biological molecules and enzymatic activity. The most common force spectroscopy techniques are optical tweezers, magnetic tweezers and atomic force microscopy. Here we describe these techniques and illustrate them with examples highlighting current capabilities and limitations.

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Year:  2008        PMID: 18511917      PMCID: PMC3397402          DOI: 10.1038/nmeth.1218

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  145 in total

1.  Cadherin interaction probed by atomic force microscopy.

Authors:  W Baumgartner; P Hinterdorfer; W Ness; A Raab; D Vestweber; H Schindler; D Drenckhahn
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  Application of optical traps in vivo.

Authors:  Steven P Gross
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

Review 3.  Single-molecule folding.

Authors:  Xiaowei Zhuang; Matthias Rief
Journal:  Curr Opin Struct Biol       Date:  2003-02       Impact factor: 6.809

4.  Pulling geometry defines the mechanical resistance of a beta-sheet protein.

Authors:  David J Brockwell; Emanuele Paci; Rebecca C Zinober; Godfrey S Beddard; Peter D Olmsted; D Alastair Smith; Richard N Perham; Sheena E Radford
Journal:  Nat Struct Biol       Date:  2003-08-17

5.  Atomic force microscope.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-03-03       Impact factor: 9.161

6.  Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB.

Authors:  Daniel A Koster; Vincent Croquette; Cees Dekker; Stewart Shuman; Nynke H Dekker
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

7.  Single-molecule DNA nanomanipulation: improved resolution through use of shorter DNA fragments.

Authors:  Andrey Revyakin; Richard H Ebright; Terence R Strick
Journal:  Nat Methods       Date:  2005-02       Impact factor: 28.547

8.  Molecular basis of fibrin clot elasticity.

Authors:  Bernard B C Lim; Eric H Lee; Marcos Sotomayor; Klaus Schulten
Journal:  Structure       Date:  2008-02-21       Impact factor: 5.006

9.  Direct observation of kinesin stepping by optical trapping interferometry.

Authors:  K Svoboda; C F Schmidt; B J Schnapp; S M Block
Journal:  Nature       Date:  1993-10-21       Impact factor: 49.962

10.  Elasticity and unfolding of single molecules of the giant muscle protein titin.

Authors:  L Tskhovrebova; J Trinick; J A Sleep; R M Simmons
Journal:  Nature       Date:  1997-05-15       Impact factor: 49.962

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  484 in total

1.  Focal Adhesion Induction at the Tip of a Functionalized Nanoelectrode.

Authors:  Daniela E Fuentes; Chilman Bae; Peter J Butler
Journal:  Cell Mol Bioeng       Date:  2011-12       Impact factor: 2.321

2.  A hot-spot motif characterizes the interface between a designed ankyrin-repeat protein and its target ligand.

Authors:  Luthur Siu-Lun Cheung; Manu Kanwar; Marc Ostermeier; Konstantinos Konstantopoulos
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

3.  Site-specific fluorescent labeling and oriented immobilization of a triple mutant of CYP3A4 via C64.

Authors:  Amélie Ménard; Yue Huang; Pierre Karam; Gonzalo Cosa; Karine Auclair
Journal:  Bioconjug Chem       Date:  2012-04-02       Impact factor: 4.774

4.  Unraveling the hydrophobic effect, one molecule at a time.

Authors:  Shekhar Garde; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-28       Impact factor: 11.205

5.  Hydrodynamic trapping of molecules in lipid bilayers.

Authors:  Peter Jönsson; James McColl; Richard W Clarke; Victor P Ostanin; Bengt Jönsson; David Klenerman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-14       Impact factor: 11.205

6.  Non-bias-limited tracking of spherical particles, enabling nanometer resolution at low magnification.

Authors:  Marijn T J van Loenhout; Jacob W J Kerssemakers; Iwijn De Vlaminck; Cees Dekker
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

7.  Manipulating particle trajectories with phase-control in surface acoustic wave microfluidics.

Authors:  Nathan D Orloff; Jaclyn R Dennis; Marco Cecchini; Ethan Schonbrun; Eduard Rocas; Yu Wang; David Novotny; Raymond W Simmonds; John Moreland; Ichiro Takeuchi; James C Booth
Journal:  Biomicrofluidics       Date:  2011-11-14       Impact factor: 2.800

8.  On-chip manipulation of single microparticles, cells, and organisms using surface acoustic waves.

Authors:  Xiaoyun Ding; Sz-Chin Steven Lin; Brian Kiraly; Hongjun Yue; Sixing Li; I-Kao Chiang; Jinjie Shi; Stephen J Benkovic; Tony Jun Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-25       Impact factor: 11.205

9.  Mesoscopic models for DNA stretching under force: New results and comparison with experiments.

Authors:  Manoel Manghi; Nicolas Destainville; John Palmeri
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-29       Impact factor: 1.890

10.  Characterizing Single-Molecule Conformational Changes Under Shear Flow with Fluorescence Microscopy.

Authors:  Yi Wang; Megan E Blauch; Avani V Pisapati; Nathan J Wittenberg; Xuanhong Cheng; X Frank Zhang
Journal:  J Vis Exp       Date:  2020-01-25       Impact factor: 1.355

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