Literature DB >> 15454450

Twisting and untwisting a single DNA molecule covered by RecA protein.

Renaud Fulconis1, Aurélien Bancaud, Jean-Francois Allemand, Vincent Croquette, Marie Dutreix, Jean-Louis Viovy.   

Abstract

We study dsDNA-RecA interactions by exerting forces in the pN range on single DNA molecules while the interstrand topological state is controlled owing to a magnetic tweezers setup. We show that unwinding a duplex DNA molecule induces RecA polymerization even at moderate force. Once initial polymerization has nucleated, the extent of RecA coverage still depends on the degree of supercoiling: exerting a positive or negative torsional constraint on the fiber forces partial depolymerization, with a strikingly greater stability when ATPgammaS is used as a cofactor instead of ATP. This nucleofilament's sensitivity to topology might be a way for the bacterial cell to limit consumption of precious RecA monomers when DNA damage is addressed through homologous recombination repair. Copyright 2004 Biophysical Society

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Year:  2004        PMID: 15454450      PMCID: PMC1304674          DOI: 10.1529/biophysj.104.043059

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

1.  Force-induced melting of the DNA double helix 1. Thermodynamic analysis.

Authors:  I Rouzina; V A Bloomfield
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

2.  RecA force generation by hydrolysis waves.

Authors:  K Klapstein; R Bruinsma
Journal:  J Biol Chem       Date:  2000-05-26       Impact factor: 5.157

3.  Topological testing of the mechanism of homology search promoted by RecA protein.

Authors:  L Cai; U Marquardt; Z Zhang; M J Taisey; J Chen
Journal:  Nucleic Acids Res       Date:  2001-03-15       Impact factor: 16.971

4.  Effects of DNA sequence and structure on binding of RecA to single-stranded DNA.

Authors:  R Bar-Ziv; A Libchaber
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-24       Impact factor: 11.205

5.  A dynamic RecA filament permits DNA polymerase-catalyzed extension of the invading strand in recombination intermediates.

Authors:  Liewei Xu; Kenneth J Marians
Journal:  J Biol Chem       Date:  2002-02-06       Impact factor: 5.157

Review 6.  The bacterial RecA protein and the recombinational DNA repair of stalled replication forks.

Authors:  Shelley L Lusetti; Michael M Cox
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

7.  Assembly of single chromatin fibers depends on the tension in the DNA molecule: magnetic tweezers study.

Authors:  Sanford H Leuba; Mikhail A Karymov; Miroslav Tomschik; Ravi Ramjit; Paul Smith; Jordanka Zlatanova
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-09       Impact factor: 11.205

8.  Structural transitions and elasticity from torque measurements on DNA.

Authors:  Zev Bryant; Michael D Stone; Jeff Gore; Steven B Smith; Nicholas R Cozzarelli; Carlos Bustamante
Journal:  Nature       Date:  2003-07-17       Impact factor: 49.962

Review 9.  Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda.

Authors:  A Kuzminov
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

10.  Thermophilic topoisomerase I on a single DNA molecule.

Authors:  N H Dekker; T Viard; C Bouthier de La Tour; M Duguet; D Bensimon; V Croquette
Journal:  J Mol Biol       Date:  2003-05-30       Impact factor: 5.469

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  18 in total

1.  Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments.

Authors:  Jan Lipfert; Jacob W J Kerssemakers; Tessa Jager; Nynke H Dekker
Journal:  Nat Methods       Date:  2010-10-17       Impact factor: 28.547

2.  Numerical investigation of sequence dependence in homologous recognition: evidence for homology traps.

Authors:  Renaud Fulconis; Marie Dutreix; Jean-Louis Viovy
Journal:  Biophys J       Date:  2005-03-04       Impact factor: 4.033

3.  Mechanism of RecA-mediated homologous recombination revisited by single molecule nanomanipulation.

Authors:  Renaud Fulconis; Judith Mine; Aurélien Bancaud; Marie Dutreix; Jean-Louis Viovy
Journal:  EMBO J       Date:  2006-08-31       Impact factor: 11.598

Review 4.  Expedient placement of two fluorescent dyes for investigating dynamic DNA protein interactions in real time.

Authors:  Sanford H Leuba; Syam P Anand; Joel M Harp; Saleem A Khan
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

Review 5.  Single-molecule imaging brings Rad51 nucleoprotein filaments into focus.

Authors:  Anthony L Forget; Stephen C Kowalczykowski
Journal:  Trends Cell Biol       Date:  2010-03-17       Impact factor: 20.808

Review 6.  The dynamic interplay between DNA topoisomerases and DNA topology.

Authors:  Yeonee Seol; Keir C Neuman
Journal:  Biophys Rev       Date:  2016-11-14

Review 7.  The many lives of type IA topoisomerases.

Authors:  Anna H Bizard; Ian D Hickson
Journal:  J Biol Chem       Date:  2020-04-10       Impact factor: 5.157

8.  The Dynamic Interplay Between DNA Topoisomerases and DNA Topology.

Authors:  Yeonee Seol; Keir C Neuman
Journal:  Biophys Rev       Date:  2016-07-02

9.  Direct observation of twisting steps during Rad51 polymerization on DNA.

Authors:  Hideyuki Arata; Aurélie Dupont; Judith Miné-Hattab; Ludovic Disseau; Axelle Renodon-Cornière; Masayuki Takahashi; Jean-Louis Viovy; Giovanni Cappello
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-02       Impact factor: 11.205

Review 10.  Visualizing protein-DNA interactions at the single-molecule level.

Authors:  Jovencio Hilario; Stephen C Kowalczykowski
Journal:  Curr Opin Chem Biol       Date:  2009-11-27       Impact factor: 8.822

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