Literature DB >> 21286785

A simple biosynthetic method for stereospecific resonance assignment of prochiral methyl groups in proteins.

Michael J Plevin1, Olivier Hamelin, Jérôme Boisbouvier, Pierre Gans.   

Abstract

A new method for stereospecific assignment of prochiral methyl groups in proteins is presented in which protein samples are produced using U-[(13)C]glucose and subsaturating amounts of 2-[(13)C]methyl-acetolactate. The resulting non-uniform labeling pattern allows proR and proS methyl groups to be easily distinguished by their different phases in a constant-time two-dimensional (1)H-(13)C correlation spectra. Protein samples are conveniently prepared using the same media composition as the main uniformly-labeled sample and contain higher levels of isotope-enrichment than fractional labeling approaches. This new strategy thus represents an economically-attractive, robust alternative for obtaining isotopically-encoded stereospecific NMR assignments of prochiral methyl groups.

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Year:  2011        PMID: 21286785     DOI: 10.1007/s10858-010-9463-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  25 in total

1.  Accurate determination of leucine and valine side-chain conformations using U-[15N/13C/2H]/[1H-(methine/methyl)-Leu/Val] isotope labeling, NOE pattern recognition, and methine Cgamma-Hgamma/Cbeta-Hbeta residual dipolar couplings: application to the 34-kDa enzyme IIA(chitobiose).

Authors:  Chun Tang; Junji Iwahara; G Marius Clore
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

Review 2.  Methyl groups as probes of structure and dynamics in NMR studies of high-molecular-weight proteins.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  Chembiochem       Date:  2005-09       Impact factor: 3.164

3.  The atomic structure of protein-protein recognition sites.

Authors:  L Lo Conte; C Chothia; J Janin
Journal:  J Mol Biol       Date:  1999-02-05       Impact factor: 5.469

4.  Stereospecific assignments of Val and Leu methyl groups in a selectively 13C-labeled 18 kDa polypeptide using 3D CT-(H) CCH-COSY and 2d 1Jc-c edited heteronuclear correlation experiments.

Authors:  W Hu; E R Zuiderweg
Journal:  J Magn Reson B       Date:  1996-10

5.  Floating stereospecific assignment revisited: application to an 18 kDa protein and comparison with J-coupling data.

Authors:  R H Folmer; C W Hilbers; R N Konings; M Nilges
Journal:  J Biomol NMR       Date:  1997-04       Impact factor: 2.835

6.  The influence of stereospecific assignments on the determination of three-dimensional structures of proteins by nuclear magnetic resonance spectroscopy. Application to the sea anemone protein BDS-I.

Authors:  P C Driscoll; A M Gronenborn; G M Clore
Journal:  FEBS Lett       Date:  1989-01-30       Impact factor: 4.124

7.  Surface, subunit interfaces and interior of oligomeric proteins.

Authors:  J Janin; S Miller; C Chothia
Journal:  J Mol Biol       Date:  1988-11-05       Impact factor: 5.469

8.  Simplification of protein NOESY spectra using bioorganic precursor synthesis and NMR spectral editing.

Authors:  Roman Lichtenecker; Martin L Ludwiczek; Walther Schmid; Robert Konrat
Journal:  J Am Chem Soc       Date:  2004-05-05       Impact factor: 15.419

9.  Stereospecific assignments of the leucine methyl resonances in the 1H NMR spectrum of Lactobacillus casei dihydrofolate reductase.

Authors:  G Ostler; A Soteriou; C M Moody; J A Khan; B Birdsall; M D Carr; D W Young; J Feeney
Journal:  FEBS Lett       Date:  1993-03-01       Impact factor: 4.124

10.  Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by biosynthetically directed fractional 13C labeling.

Authors:  D Neri; T Szyperski; G Otting; H Senn; K Wüthrich
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

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  8 in total

1.  Nuclear overhauser spectroscopy of chiral CHD methylene groups.

Authors:  Rafal Augustyniak; Jan Stanek; Henri Colaux; Geoffrey Bodenhausen; Wiktor Koźmiński; Torsten Herrmann; Fabien Ferrage
Journal:  J Biomol NMR       Date:  2015-11-27       Impact factor: 2.835

2.  Stereospecific assignments in proteins using exact NOEs.

Authors:  Julien Orts; Beat Vögeli; Roland Riek; Peter Güntert
Journal:  J Biomol NMR       Date:  2013-10-18       Impact factor: 2.835

3.  Protein-ligand structure guided by backbone and side-chain proton chemical shift perturbations.

Authors:  Clémentine Aguirre; Tim ten Brink; Olivier Cala; Jean-François Guichou; Isabelle Krimm
Journal:  J Biomol NMR       Date:  2014-09-26       Impact factor: 2.835

4.  FLAMEnGO: a fuzzy logic approach for methyl group assignment using NOESY and paramagnetic relaxation enhancement data.

Authors:  Fa-An Chao; Lei Shi; Larry R Masterson; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2011-10-20       Impact factor: 2.229

5.  Structure refinement and membrane positioning of selectively labeled OmpX in phospholipid nanodiscs.

Authors:  Franz Hagn; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2014-11-28       Impact factor: 2.835

6.  Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR.

Authors:  Franz Hagn; Mahmoud L Nasr; Gerhard Wagner
Journal:  Nat Protoc       Date:  2017-12-07       Impact factor: 13.491

7.  CH3-specific NMR assignment of alanine, isoleucine, leucine and valine methyl groups in high molecular weight proteins using a single sample.

Authors:  Rime Kerfah; Olivier Hamelin; Jérôme Boisbouvier; Dominique Marion
Journal:  J Biomol NMR       Date:  2015-11-13       Impact factor: 2.835

8.  Biosynthetically directed ²H labelling for stereospecific resonance assignments of glycine methylene groups.

Authors:  Karin V Loscha; Gottfried Otting
Journal:  J Biomol NMR       Date:  2012-11-29       Impact factor: 2.835

  8 in total

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