Literature DB >> 21626214

A systematic mutagenesis-driven strategy for site-resolved NMR studies of supramolecular assemblies.

Carlos Amero1, M Asunción Durá, Marjolaine Noirclerc-Savoye, Arnaud Perollier, Benoit Gallet, Michael J Plevin, Thierry Vernet, Bruno Franzetti, Jérôme Boisbouvier.   

Abstract

Obtaining sequence-specific assignments remains a major bottleneck in solution NMR investigations of supramolecular structure, dynamics and interactions. Here we demonstrate that resonance assignment of methyl probes in high molecular weight protein assemblies can be efficiently achieved by combining fast NMR experiments, residue-type-specific isotope-labeling and automated site-directed mutagenesis. The utility of this general and straightforward strategy is demonstrated through the characterization of intermolecular interactions involving a 468-kDa multimeric aminopeptidase, PhTET2.

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Year:  2011        PMID: 21626214     DOI: 10.1007/s10858-011-9513-5

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  29 in total

1.  NMR analysis of a 900K GroEL GroES complex.

Authors:  Jocelyne Fiaux; Eric B Bertelsen; Arthur L Horwich; Kurt Wüthrich
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

2.  An isotope labeling strategy for methyl TROSY spectroscopy.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

3.  The proteasome antechamber maintains substrates in an unfolded state.

Authors:  Amy M Ruschak; Tomasz L Religa; Sarah Breuer; Susanne Witt; Lewis E Kay
Journal:  Nature       Date:  2010-10-14       Impact factor: 49.962

4.  Synthesis of a 13C-methyl-group-labeled methionine precursor as a useful tool for simplifying protein structural analysis by NMR spectroscopy.

Authors:  Michael Fischer; Karin Kloiber; Johannes Häusler; Karin Ledolter; Robert Konrat; Walther Schmid
Journal:  Chembiochem       Date:  2007-04-16       Impact factor: 3.164

5.  Structural basis for signal-sequence recognition by the translocase motor SecA as determined by NMR.

Authors:  Ioannis Gelis; Alexandre M J J Bonvin; Dimitra Keramisanou; Marina Koukaki; Giorgos Gouridis; Spyridoula Karamanou; Anastassios Economou; Charalampos G Kalodimos
Journal:  Cell       Date:  2007-11-16       Impact factor: 41.582

6.  Fast two-dimensional NMR spectroscopy of high molecular weight protein assemblies.

Authors:  Carlos Amero; Paul Schanda; M Asunción Durá; Isabel Ayala; Dominique Marion; Bruno Franzetti; Bernhard Brutscher; Jérôme Boisbouvier
Journal:  J Am Chem Soc       Date:  2009-03-18       Impact factor: 15.419

7.  A 1H-NMR study of human interleukin-1 beta. Sequence-specific assignment of aromatic residues using site-directed mutant proteins.

Authors:  A M Gronenborn; G M Clore; U Schmeissner; P Wingfield
Journal:  Eur J Biochem       Date:  1986-11-17

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Genetic assignment of resonances in the NMR spectrum of a protein: lac repressor.

Authors:  M A Jarema; P Lu; J H Miller
Journal:  Proc Natl Acad Sci U S A       Date:  1981-05       Impact factor: 11.205

10.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

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  34 in total

1.  Scrambling free combinatorial labeling of alanine-β, isoleucine-δ1, leucine-proS and valine-proS methyl groups for the detection of long range NOEs.

Authors:  Rime Kerfah; Michael J Plevin; Ombeline Pessey; Olivier Hamelin; Pierre Gans; Jerome Boisbouvier
Journal:  J Biomol NMR       Date:  2014-11-28       Impact factor: 2.835

2.  PARAssign--paramagnetic NMR assignments of protein nuclei on the basis of pseudocontact shifts.

Authors:  Simon P Skinner; Mois Moshev; Mathias A S Hass; Peter H J Keizers; Marcellus Ubbink
Journal:  J Biomol NMR       Date:  2013-03-23       Impact factor: 2.835

Review 3.  Nuclear magnetic resonance spectroscopy of the circadian clock of cyanobacteria.

Authors:  Yong-Gang Chang; Roger Tseng; Nai-Wei Kuo; Andy LiWang
Journal:  Integr Comp Biol       Date:  2013-05-10       Impact factor: 3.326

4.  Differential isotope-labeling for Leu and Val residues in a protein by E. coli cellular expression using stereo-specifically methyl labeled amino acids.

Authors:  Yohei Miyanoiri; Mitsuhiro Takeda; Kosuke Okuma; Akira M Ono; Tsutomu Terauchi; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2013-09-21       Impact factor: 2.835

5.  Aromatic Ring Dynamics, Thermal Activation, and Transient Conformations of a 468 kDa Enzyme by Specific 1H-13C Labeling and Fast Magic-Angle Spinning NMR.

Authors:  Diego F Gauto; Pavel Macek; Alessandro Barducci; Hugo Fraga; Audrey Hessel; Tsutomu Terauchi; David Gajan; Yohei Miyanoiri; Jerome Boisbouvier; Roman Lichtenecker; Masatsune Kainosho; Paul Schanda
Journal:  J Am Chem Soc       Date:  2019-07-05       Impact factor: 15.419

6.  FLAMEnGO: a fuzzy logic approach for methyl group assignment using NOESY and paramagnetic relaxation enhancement data.

Authors:  Fa-An Chao; Lei Shi; Larry R Masterson; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2011-10-20       Impact factor: 2.229

7.  Specific labeling and assignment strategies of valine methyl groups for NMR studies of high molecular weight proteins.

Authors:  Guillaume Mas; Elodie Crublet; Olivier Hamelin; Pierre Gans; Jérôme Boisbouvier
Journal:  J Biomol NMR       Date:  2013-11       Impact factor: 2.835

8.  Automatic methyl assignment in large proteins by the MAGIC algorithm.

Authors:  Yoan R Monneau; Paolo Rossi; Anusarka Bhaumik; Chengdong Huang; Yajun Jiang; Tamjeed Saleh; Tao Xie; Qiong Xing; Charalampos G Kalodimos
Journal:  J Biomol NMR       Date:  2017-11-02       Impact factor: 2.835

9.  Complete assignment of Ala, Ile, Leu, Met and Val methyl groups of human blood group A and B glycosyltransferases using lanthanide-induced pseudocontact shifts and methyl-methyl NOESY.

Authors:  Friedemann Flügge; Thomas Peters
Journal:  J Biomol NMR       Date:  2018-04-26       Impact factor: 2.835

10.  FLAMEnGO 2.0: an enhanced fuzzy logic algorithm for structure-based assignment of methyl group resonances.

Authors:  Fa-An Chao; Jonggul Kim; Youlin Xia; Michael Milligan; Nancy Rowe; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2014-05-02       Impact factor: 2.229

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