Literature DB >> 11518535

Reversible lattice repacking illustrates the temperature dependence of macromolecular interactions.

D H Juers1, B W Matthews.   

Abstract

Flash-freezing, which has become routine in macromolecular X-ray crystallography, causes the crystal to contract substantially. In the case of Escherichia coli beta-galactosidase the changes are reversible and are shown to be due to lattice repacking. On cooling, the area of the protein surface involved in lattice contacts increases by 50 %. There are substantial alterations in intermolecular contacts, these changes being dominated by the long, polar side-chains. For entropic reasons such side-chains, as well as surface solvent molecules, tend to be somewhat disordered at room temperature but can form extensive hydrogen-bonded networks on cooling. Low-temperature density measurements suggest that, at least in some cases, the beneficial effect of cryosolvents may be due to a density increase on vitrification which reduces the volume of bulk solvent that needs to be expelled from the crystal. Analysis of beta-galactosidase and several other proteins suggests that both intramolecular and intermolecular contact interfaces can be perturbed by cryocooling but that the changes tend to be more dramatic in the latter case. The temperature-dependence of the intermolecular interactions suggests that caution may be necessary in interpreting protein-protein and protein-nucleic acid interactions based on low-temperature crystal structures. Copyright 2001 Academic Press.

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Year:  2001        PMID: 11518535     DOI: 10.1006/jmbi.2001.4891

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  54 in total

1.  Biomolecular cryocrystallography: structural changes during flash-cooling.

Authors:  Bertil Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-29       Impact factor: 11.205

2.  Computational design of a protein crystal.

Authors:  Christopher J Lanci; Christopher M MacDermaid; Seung-gu Kang; Rudresh Acharya; Benjamin North; Xi Yang; X Jade Qiu; William F DeGrado; Jeffery G Saven
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-25       Impact factor: 11.205

3.  Hyperquenching for protein cryocrystallography.

Authors:  Matthew Warkentin; Viatcheslav Berejnov; Naji S Husseini; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2006-12-01       Impact factor: 3.304

4.  Glass transition in thaumatin crystals revealed through temperature-dependent radiation-sensitivity measurements.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-09-18

5.  In situ X-ray data collection and structure phasing of protein crystals at Structural Biology Center 19-ID.

Authors:  Karolina Michalska; Kemin Tan; Changsoo Chang; Hui Li; Catherine Hatzos-Skintges; Michael Molitsky; Randy Alkire; Andrzej Joachimiak
Journal:  J Synchrotron Radiat       Date:  2015-10-15       Impact factor: 2.616

6.  Salt bridges: geometrically specific, designable interactions.

Authors:  Jason E Donald; Daniel W Kulp; William F DeGrado
Journal:  Proteins       Date:  2011-01-05

7.  Measuring the Densities of Aqueous Glasses at Cryogenic Temperatures.

Authors:  Chen Shen; Ethan F Julius; Timothy J Tyree; Ritwik Dan; David W Moreau; Robert Thorne
Journal:  J Vis Exp       Date:  2017-06-28       Impact factor: 1.355

Review 8.  A general method for hyperquenching protein crystals.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  J Struct Funct Genomics       Date:  2007-10-19

9.  Structural basis for the metal-selective activation of the manganese transport regulator of Bacillus subtilis.

Authors:  Joseph I Kliegman; Sarah L Griner; John D Helmann; Richard G Brennan; Arthur Glasfeld
Journal:  Biochemistry       Date:  2006-03-21       Impact factor: 3.162

10.  Role of flexibility and polarity as determinants of the hydration of internal cavities and pockets in proteins.

Authors:  Ana Damjanović; Jamie L Schlessman; Carolyn A Fitch; Angel E García; Bertrand García-Moreno E
Journal:  Biophys J       Date:  2007-06-29       Impact factor: 4.033

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