Literature DB >> 24726017

Anomalous diffraction in crystallographic phase evaluation.

Wayne A Hendrickson1.   

Abstract

X-ray diffraction patterns from crystals of biological macromolecules contain sufficient information to define atomic structures, but atomic positions are inextricable without having electron-density images. Diffraction measurements provide amplitudes, but the computation of electron density also requires phases for the diffracted waves. The resonance phenomenon known as anomalous scattering offers a powerful solution to this phase problem. Exploiting scattering resonances from diverse elements, the methods of MAD (multiwavelength anomalous diffraction) and SAD (single-wavelength anomalous diffraction) now predominate for de novo determinations of atomic-level biological structures. This review describes the physical underpinnings of anomalous diffraction methods, the evolution of these methods to their current maturity, the elements, procedures and instrumentation used for effective implementation, and the realm of applications.

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Year:  2014        PMID: 24726017      PMCID: PMC4128195          DOI: 10.1017/S0033583514000018

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  169 in total

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

2.  Quaternary and tertiary structure of haemerythrin.

Authors:  K B Ward; W A Hendrickson; G L Klippenstein
Journal:  Nature       Date:  1975-10-30       Impact factor: 49.962

3.  Crystal structure of Na+, K(+)-ATPase in the Na(+)-bound state.

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4.  Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures.

Authors:  Zhucheng Chen; Haijuan Yang; Nikola P Pavletich
Journal:  Nature       Date:  2008-05-22       Impact factor: 49.962

5.  Getting the most out of X-ray home sources.

Authors:  R A P Nagem; A L B Ambrosio; A L Rojas; M V A S Navarro; A M Golubev; R C Garratt; I Polikarpov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-07-20

Review 6.  Selenium derivatization of nucleic acids for X-ray crystal-structure and function studies.

Authors:  Jia Sheng; Zhen Huang
Journal:  Chem Biodivers       Date:  2010-04       Impact factor: 2.408

7.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

8.  Triiodide derivatization in protein crystallography.

Authors:  Gwyndaf Evans; Gérard Bricogne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-10-23

9.  Crystallization of a fragment of human fibronectin: introduction of methionine by site-directed mutagenesis to allow phasing via selenomethionine.

Authors:  D J Leahy; H P Erickson; I Aukhil; P Joshi; W A Hendrickson
Journal:  Proteins       Date:  1994-05

10.  Exploiting the anisotropy of anomalous scattering boosts the phasing power of SAD and MAD experiments.

Authors:  Marc Schiltz; Gérard Bricogne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-06-18
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  42 in total

1.  G protein-coupled receptors: the evolution of structural insight.

Authors:  Samantha B Gacasan; Daniel L Baker; Abby L Parrill
Journal:  AIMS Biophys       Date:  2017-08-21

2.  A Novel Bromine-Containing Paroxetine Analogue Provides Mechanistic Clues for Binding Ambiguity at the Central Primary Binding Site of the Serotonin Transporter.

Authors:  Rachel D Slack; Ara M Abramyan; Helen Tang; Sitaram Meena; Bruce A Davis; Alessandro Bonifazi; JoLynn B Giancola; Jeffrey R Deschamps; Sett Naing; Hideaki Yano; Satinder K Singh; Amy Hauck Newman; Lei Shi
Journal:  ACS Chem Neurosci       Date:  2019-08-22       Impact factor: 4.418

3.  Fast native-SAD phasing for routine macromolecular structure determination.

Authors:  Tobias Weinert; Vincent Olieric; Sandro Waltersperger; Ezequiel Panepucci; Lirong Chen; Hua Zhang; Dayong Zhou; John Rose; Akio Ebihara; Seiki Kuramitsu; Dianfan Li; Nicole Howe; Gisela Schnapp; Alexander Pautsch; Katja Bargsten; Andrea E Prota; Parag Surana; Jithesh Kottur; Deepak T Nair; Federica Basilico; Valentina Cecatiello; Sebastiano Pasqualato; Andreas Boland; Oliver Weichenrieder; Bi-Cheng Wang; Michel O Steinmetz; Martin Caffrey; Meitian Wang
Journal:  Nat Methods       Date:  2014-12-15       Impact factor: 28.547

4.  Linear fitting of multi-threshold counting data with a pixel-array detector for spectral X-ray imaging.

Authors:  Ryan D Muir; Nicholas R Pogranichney; J Lewis Muir; Shane Z Sullivan; Kevin P Battaile; Anne M Mulichak; Scott J Toth; Lisa J Keefe; Garth J Simpson
Journal:  J Synchrotron Radiat       Date:  2014-08-15       Impact factor: 2.616

5.  Multi-crystal native SAD analysis at 6 keV.

Authors:  Qun Liu; Youzhong Guo; Yanqi Chang; Zheng Cai; Zahra Assur; Filippo Mancia; Mark I Greene; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-09-30

Review 6.  Crystallographic phasing from weak anomalous signals.

Authors:  Qun Liu; Wayne A Hendrickson
Journal:  Curr Opin Struct Biol       Date:  2015-09-30       Impact factor: 6.809

7.  Escherichia coli as host for membrane protein structure determination: a global analysis.

Authors:  Georges Hattab; Dror E Warschawski; Karine Moncoq; Bruno Miroux
Journal:  Sci Rep       Date:  2015-07-10       Impact factor: 4.379

8.  The crystal structure of the Helicobacter pylori LlaJI.R1 N-terminal domain provides a model for site-specific DNA binding.

Authors:  Christopher J Hosford; Joshua S Chappie
Journal:  J Biol Chem       Date:  2018-06-12       Impact factor: 5.157

9.  The structure of the Thermococcus gammatolerans McrB N-terminal domain reveals a new mode of substrate recognition and specificity among McrB homologs.

Authors:  Christopher J Hosford; Anthony Q Bui; Joshua S Chappie
Journal:  J Biol Chem       Date:  2019-12-10       Impact factor: 5.157

Review 10.  Contemporary Use of Anomalous Diffraction in Biomolecular Structure Analysis.

Authors:  Qun Liu; Wayne A Hendrickson
Journal:  Methods Mol Biol       Date:  2017
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