Literature DB >> 20696391

Zernike phase contrast cryo-electron microscopy and tomography for structure determination at nanometer and subnanometer resolutions.

Kazuyoshi Murata1, Xiangan Liu, Radostin Danev, Joanita Jakana, Michael F Schmid, Jonathan King, Kuniaki Nagayama, Wah Chiu.   

Abstract

Zernike phase contrast cryo-electron microscopy (ZPC-cryoEM) is an emerging technique that is capable of producing higher image contrast than conventional cryoEM. By combining this technique with advanced image processing methods, we achieved subnanometer resolution for two biological specimens: 2D bacteriorhodopsin crystal and epsilon15 bacteriophage. For an asymmetric reconstruction of epsilon15 bacteriophage, ZPC-cryoEM can reduce the required amount of data by a factor of approximately 3, compared with conventional cryoEM. The reconstruction was carried out to 13 A resolution without the need to correct the contrast transfer function. New structural features at the portal vertex of the epsilon15 bacteriophage are revealed in this reconstruction. Using ZPC cryo-electron tomography (ZPC-cryoET), a similar level of data reduction and higher resolution structures of epsilon15 bacteriophage can be obtained relative to conventional cryoET. These results show quantitatively the benefits of ZPC-cryoEM and ZPC-cryoET for structural determinations of macromolecular machines at nanometer and subnanometer resolutions. Copyright 2010 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20696391      PMCID: PMC2925294          DOI: 10.1016/j.str.2010.06.006

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  29 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

3.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

4.  Possibility of a phase contrast electron microscope.

Authors:  D F Parsons; H M Johnson
Journal:  Appl Opt       Date:  1972-12-01       Impact factor: 1.980

5.  2dx--user-friendly image processing for 2D crystals.

Authors:  Bryant Gipson; Xiangyan Zeng; Zi Yan Zhang; Henning Stahlberg
Journal:  J Struct Biol       Date:  2006-09-01       Impact factor: 2.867

6.  2dx_merge: data management and merging for 2D crystal images.

Authors:  Bryant Gipson; Xiangyan Zeng; Henning Stahlberg
Journal:  J Struct Biol       Date:  2007-09-25       Impact factor: 2.867

7.  Zernike phase contrast electron microscopy of ice-embedded influenza A virus.

Authors:  Masashi Yamaguchi; Radostin Danev; Kiyoto Nishiyama; Keishin Sugawara; Kuniaki Nagayama
Journal:  J Struct Biol       Date:  2008-01-26       Impact factor: 2.867

8.  Achievable resolution from images of biological specimens acquired from a 4k x 4k CCD camera in a 300-kV electron cryomicroscope.

Authors:  Dong-Hua Chen; Joanita Jakana; Xiangan Liu; Michael F Schmid; Wah Chiu
Journal:  J Struct Biol       Date:  2008-04-14       Impact factor: 2.867

9.  Practical factors affecting the performance of a thin-film phase plate for transmission electron microscopy.

Authors:  Radostin Danev; Robert M Glaeser; Kuniaki Nagayama
Journal:  Ultramicroscopy       Date:  2008-12-11       Impact factor: 2.689

10.  Zernike phase contrast cryo-electron tomography.

Authors:  Radostin Danev; Shuji Kanamaru; Michael Marko; Kuniaki Nagayama
Journal:  J Struct Biol       Date:  2010-03-27       Impact factor: 2.867

View more
  56 in total

1.  Retrofit implementation of Zernike phase plate imaging for cryo-TEM.

Authors:  Michael Marko; Ardean Leith; Chyongere Hsieh; Radostin Danev
Journal:  J Struct Biol       Date:  2011-01-25       Impact factor: 2.867

2.  Methods for testing Zernike phase plates and a report on silicon-based phase plates with reduced charging and improved ageing characteristics.

Authors:  Michael Marko; Xing Meng; Chyongere Hsieh; James Roussie; Christopher Striemer
Journal:  J Struct Biol       Date:  2013-08-28       Impact factor: 2.867

3.  Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency.

Authors:  Benjamin E Bammes; Ryan H Rochat; Joanita Jakana; Dong-Hua Chen; Wah Chiu
Journal:  J Struct Biol       Date:  2012-01-21       Impact factor: 2.867

Review 4.  Invited review article: Methods for imaging weak-phase objects in electron microscopy.

Authors:  Robert M Glaeser
Journal:  Rev Sci Instrum       Date:  2013-11       Impact factor: 1.523

5.  Structural analysis of respiratory syncytial virus reveals the position of M2-1 between the matrix protein and the ribonucleoprotein complex.

Authors:  Gabriella Kiss; Jens M Holl; Grant M Williams; Eric Alonas; Daryll Vanover; Aaron W Lifland; Manasa Gudheti; Ricardo C Guerrero-Ferreira; Vinod Nair; Hong Yi; Barney S Graham; Philip J Santangelo; Elizabeth R Wright
Journal:  J Virol       Date:  2014-04-23       Impact factor: 5.103

Review 6.  Reaching the information limit in cryo-EM of biological macromolecules: experimental aspects.

Authors:  Robert M Glaeser; Richard J Hall
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

7.  Volta potential phase plate for in-focus phase contrast transmission electron microscopy.

Authors:  Radostin Danev; Bart Buijsse; Maryam Khoshouei; Jürgen M Plitzko; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-20       Impact factor: 11.205

8.  High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching.

Authors:  Min Xu; Martin Beck; Frank Alber
Journal:  J Struct Biol       Date:  2012-03-07       Impact factor: 2.867

9.  Electron tomography of paracrystalline 2D arrays.

Authors:  Hanspeter Winkler; Shenping Wu; Kenneth A Taylor
Journal:  Methods Mol Biol       Date:  2013

Review 10.  Ultrastructural analysis of neuronal synapses using state-of-the-art nano-imaging techniques.

Authors:  Changlu Tao; Chenglong Xia; Xiaobing Chen; Z Hong Zhou; Guoqiang Bi
Journal:  Neurosci Bull       Date:  2012-08       Impact factor: 5.203

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.