Literature DB >> 18514542

Achievable resolution from images of biological specimens acquired from a 4k x 4k CCD camera in a 300-kV electron cryomicroscope.

Dong-Hua Chen1, Joanita Jakana, Xiangan Liu, Michael F Schmid, Wah Chiu.   

Abstract

Bacteriorhodopsin and epsilon 15 bacteriophage were used as biological test specimens to evaluate the potential structural resolution with images captured from a 4k x 4k charge-coupled device (CCD) camera in a 300-kV electron cryomicroscope. The phase residuals computed from the bacteriorhodopsin CCD images taken at 84,000x effective magnification averaged 15.7 degrees out to 5.8-A resolution relative to Henderson's published values. Using a single-particle reconstruction technique, we obtained an 8.2-A icosahedral structure of epsilon 15 bacteriophage with the CCD images collected at an effective magnification of 56,000x. These results demonstrate that it is feasible to retrieve biological structures to a resolution close to 2/3 of the Nyquist frequency from the CCD images recorded in a 300-kV electron cryomicroscope at a moderately high but practically acceptable microscope magnification.

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Year:  2008        PMID: 18514542      PMCID: PMC2504495          DOI: 10.1016/j.jsb.2008.04.001

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  38 in total

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Journal:  Q Rev Biophys       Date:  2000-02       Impact factor: 5.318

2.  Local average intensity-based method for identifying spherical particles in electron micrographs.

Authors:  T Kivioja; J Ravantti; A Verkhovsky; E Ukkonen; D Bamford
Journal:  J Struct Biol       Date:  2000-08       Impact factor: 2.867

3.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

4.  Image contrast in high-resolution electron microscopy of biological macromolecules: TMV in ice.

Authors:  R Henderson
Journal:  Ultramicroscopy       Date:  1992-10       Impact factor: 2.689

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Authors:  I A Kuo; R M Glaeser
Journal:  Ultramicroscopy       Date:  1975-07       Impact factor: 2.689

6.  Automated image acquisition and processing using a new generation of 4K x 4K CCD cameras for cryo electron microscopic studies of macromolecular assemblies.

Authors:  Peijun Zhang; Mario J Borgnia; Paul Mooney; Dan Shi; Ming Pan; Philip O'Herron; Albert Mao; David Brogan; Jacqueline L S Milne; Sriram Subramaniam
Journal:  J Struct Biol       Date:  2003-08       Impact factor: 2.867

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Journal:  J Electron Microsc (Tokyo)       Date:  1965

8.  Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy.

Authors:  R Henderson; J M Baldwin; T A Ceska; F Zemlin; E Beckmann; K H Downing
Journal:  J Mol Biol       Date:  1990-06-20       Impact factor: 5.469

9.  A 9 angstroms single particle reconstruction from CCD captured images on a 200 kV electron cryomicroscope.

Authors:  Christopher R Booth; Wen Jiang; Matthew L Baker; Z Hong Zhou; Steven J Ludtke; Wah Chiu
Journal:  J Struct Biol       Date:  2004-08       Impact factor: 2.867

10.  Structure and gating mechanism of the acetylcholine receptor pore.

Authors:  Atsuo Miyazawa; Yoshinori Fujiyoshi; Nigel Unwin
Journal:  Nature       Date:  2003-06-26       Impact factor: 49.962

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  11 in total

1.  Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency.

Authors:  Benjamin E Bammes; Ryan H Rochat; Joanita Jakana; Dong-Hua Chen; Wah Chiu
Journal:  J Struct Biol       Date:  2012-01-21       Impact factor: 2.867

2.  CTER-rapid estimation of CTF parameters with error assessment.

Authors:  Pawel A Penczek; Jia Fang; Xueming Li; Yifan Cheng; Justus Loerke; Christian M T Spahn
Journal:  Ultramicroscopy       Date:  2014-02-07       Impact factor: 2.689

3.  Practical performance evaluation of a 10k × 10k CCD for electron cryo-microscopy.

Authors:  Benjamin E Bammes; Ryan H Rochat; Joanita Jakana; Wah Chiu
Journal:  J Struct Biol       Date:  2011-05-17       Impact factor: 2.867

4.  Zernike phase contrast cryo-electron microscopy and tomography for structure determination at nanometer and subnanometer resolutions.

Authors:  Kazuyoshi Murata; Xiangan Liu; Radostin Danev; Joanita Jakana; Michael F Schmid; Jonathan King; Kuniaki Nagayama; Wah Chiu
Journal:  Structure       Date:  2010-08-11       Impact factor: 5.006

5.  4.6A Cryo-EM reconstruction of tobacco mosaic virus from images recorded at 300 keV on a 4k x 4k CCD camera.

Authors:  Daniel K Clare; Elena V Orlova
Journal:  J Struct Biol       Date:  2010-06-15       Impact factor: 2.867

6.  JADAS: a customizable automated data acquisition system and its application to ice-embedded single particles.

Authors:  Junjie Zhang; Natsuko Nakamura; Yuko Shimizu; Nathan Liang; Xiangan Liu; Joanita Jakana; Michael P Marsh; Christopher R Booth; Takao Shinkawa; Munetaka Nakata; Wah Chiu
Journal:  J Struct Biol       Date:  2008-09-30       Impact factor: 2.867

7.  Radiation damage in single-particle cryo-electron microscopy: effects of dose and dose rate.

Authors:  Manikandan Karuppasamy; Fatemeh Karimi Nejadasl; Milos Vulovic; Abraham J Koster; Raimond B G Ravelli
Journal:  J Synchrotron Radiat       Date:  2011-04-09       Impact factor: 2.616

Review 8.  Cryo-electron Microscopy Analysis of Structurally Heterogeneous Macromolecular Complexes.

Authors:  Slavica Jonić
Journal:  Comput Struct Biotechnol J       Date:  2016-10-14       Impact factor: 7.271

9.  Machining protein microcrystals for structure determination by electron diffraction.

Authors:  Helen M E Duyvesteyn; Abhay Kotecha; Helen M Ginn; Corey W Hecksel; Emma V Beale; Felix de Haas; Gwyndaf Evans; Peijun Zhang; Wah Chiu; David I Stuart
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-31       Impact factor: 12.779

Review 10.  Structural analysis of macromolecular assemblies by electron microscopy.

Authors:  E V Orlova; H R Saibil
Journal:  Chem Rev       Date:  2011-09-16       Impact factor: 60.622

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