Literature DB >> 18287054

A folding space odyssey.

Alan R Davidson1.   

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Year:  2008        PMID： 18287054      PMCID： PMC2268531          DOI： 10.1073/pnas.0800030105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  18 in total

1.  An evolutionary bridge to a new protein fold.

Authors:  M H Cordes; R E Burton; N P Walsh; C J McKnight; R T Sauer
Journal:  Nat Struct Biol       Date:  2000-12

Review 2.  Fold change in evolution of protein structures.

Authors:  N V Grishin
Journal:  J Struct Biol       Date:  2001 May-Jun       Impact factor: 2.867

3.  The solution structure of a chimeric LEKTI domain reveals a chameleon sequence.

Authors:  Henning Tidow; Thomas Lauber; Klaus Vitzithum; Christian P Sommerhoff; Paul Rösch; Ute C Marx
Journal:  Biochemistry       Date:  2004-09-07       Impact factor: 3.162

4.  Secondary structure switching in Cro protein evolution.

Authors:  Tracey Newlove; Jay H Konieczka; Matthew H J Cordes
Journal:  Structure       Date:  2004-04       Impact factor: 5.006

5.  Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds.

Authors:  Christian G Roessler; Branwen M Hall; William J Anderson; Wendy M Ingram; Sue A Roberts; William R Montfort; Matthew H J Cordes
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-28       Impact factor: 11.205

6.  Protein alchemy: changing beta-sheet into alpha-helix.

Authors:  S Dalal; S Balasubramanian; L Regan
Journal:  Nat Struct Biol       Date:  1997-07

7.  Context-dependent secondary structure formation of a designed protein sequence.

Authors:  D L Minor; P S Kim
Journal:  Nature       Date:  1996-04-25       Impact factor: 49.962

8.  Protein folding: predicting predicting.

Authors:  G D Rose; T P Creamer
Journal:  Proteins       Date:  1994-05

9.  Design of a "minimAl" homeodomain: the N-terminal arm modulates DNA binding affinity and stabilizes homeodomain structure.

Authors:  Z Shang; V E Isaac; H Li; L Patel; K M Catron; T Curran; G T Montelione; C Abate
Journal:  Proc Natl Acad Sci U S A       Date:  1994-08-30       Impact factor: 11.205

10.  The Jalview Java alignment editor.

Authors:  Michele Clamp; James Cuff; Stephen M Searle; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2004-01-22       Impact factor: 6.937
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  11 in total

1.  Phages have adapted the same protein fold to fulfill multiple functions in virion assembly.

Authors:  Lia Cardarelli; Lisa G Pell; Philipp Neudecker; Nawaz Pirani; Amanda Liu; Lindsay A Baker; John L Rubinstein; Karen L Maxwell; Alan R Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-26       Impact factor: 11.205

2.  The denatured state dictates the topology of two proteins with almost identical sequence but different native structure and function.

Authors:  Angela Morrone; Michelle E McCully; Philip N Bryan; Maurizio Brunori; Valerie Daggett; Stefano Gianni; Carlo Travaglini-Allocatelli
Journal:  J Biol Chem       Date:  2010-11-29       Impact factor: 5.157

3.  Structural relationships among proteins with different global topologies and their implications for function annotation strategies.

Authors:  Donald Petrey; Markus Fischer; Barry Honig
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-24       Impact factor: 11.205

4.  A minimal sequence code for switching protein structure and function.

Authors:  Patrick A Alexander; Yanan He; Yihong Chen; John Orban; Philip N Bryan
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-18       Impact factor: 11.205

Review 5.  Proteins that switch folds.

Authors:  Philip N Bryan; John Orban
Journal:  Curr Opin Struct Biol       Date:  2010-06-28       Impact factor: 6.809

6.  Smooth functional transition along a mutational pathway with an abrupt protein fold switch.

Authors:  Christian Holzgräfe; Stefan Wallin
Journal:  Biophys J       Date:  2014-09-02       Impact factor: 4.033

7.  De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds.

Authors:  Yang Shen; Philip N Bryan; Yanan He; John Orban; David Baker; Ad Bax
Journal:  Protein Sci       Date:  2010-02       Impact factor: 6.725

8.  The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies.

Authors:  Alison L Cuff; Ian Sillitoe; Tony Lewis; Oliver C Redfern; Richard Garratt; Janet Thornton; Christine A Orengo
Journal:  Nucleic Acids Res       Date:  2008-11-07       Impact factor: 16.971

Review 9.  Is protein classification necessary? Toward alternative approaches to function annotation.

Authors:  Donald Petrey; Barry Honig
Journal:  Curr Opin Struct Biol       Date:  2009-03-05       Impact factor: 6.809

10.  Structural Bridges through Fold Space.

Authors:  Hannah Edwards; Charlotte M Deane
Journal:  PLoS Comput Biol       Date:  2015-09-15       Impact factor: 4.475
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