Literature DB >> 21064163

Converting a protein into a switch for biosensing and functional regulation.

Margaret M Stratton1, Stewart N Loh.   

Abstract

Proteins that switch conformations in response to a signaling event (e.g., ligand binding or chemical modification) present a unique solution to the design of reagent-free biosensors as well as molecules whose biological functions are regulated in useful ways. The principal roadblock in the path to develop such molecules is that the majority of natural proteins do not change conformation upon binding their cognate ligands or becoming chemically modified. Herein, we review recent protein engineering efforts to introduce switching properties into binding proteins. By co-opting natural allosteric coupling, joining proteins in creative ways and formulating altogether new switching mechanisms, researchers are learning how to coax conformational changes from proteins that previously had none. These studies are providing some answers to the challenging question: how can one convert a lock-and-key binding protein into a molecular switch?

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Year:  2011        PMID: 21064163      PMCID: PMC3047058          DOI: 10.1002/pro.541

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  80 in total

1.  Structure-based design of a photocontrolled DNA binding protein.

Authors:  Stacy-Anne Morgan; Sameer Al-Abdul-Wahid; G Andrew Woolley
Journal:  J Mol Biol       Date:  2010-04-02       Impact factor: 5.469

Review 2.  Understanding protein non-folding.

Authors:  Vladimir N Uversky; A Keith Dunker
Journal:  Biochim Biophys Acta       Date:  2010-02-01

Review 3.  Critical aspects of biointerface design and their impact on biosensor development.

Authors:  Stella H North; Evgeniya H Lock; Chris R Taitt; Scott G Walton
Journal:  Anal Bioanal Chem       Date:  2010-03-27       Impact factor: 4.142

4.  Computational design of ligand binding is not a solved problem.

Authors:  Bettina Schreier; Christian Stumpp; Silke Wiesner; Birte Höcker
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-15       Impact factor: 11.205

5.  Engineering an artificial zymogen by alternate frame protein folding.

Authors:  Diana M Mitrea; Lee S Parsons; Stewart N Loh
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-26       Impact factor: 11.205

6.  Visualization of JNK activity dynamics with a genetically encoded fluorescent biosensor.

Authors:  Matthew Fosbrink; Nwe-Nwe Aye-Han; Raymond Cheong; Andre Levchenko; Jin Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-08       Impact factor: 11.205

7.  Rational conversion of affinity reagents into label-free sensors for Peptide motifs by designed allostery.

Authors:  Jin Huang; Shohei Koide
Journal:  ACS Chem Biol       Date:  2010-03-19       Impact factor: 5.100

8.  Folding-based electrochemical biosensors: the case for responsive nucleic acid architectures.

Authors:  Arica A Lubin; Kevin W Plaxco
Journal:  Acc Chem Res       Date:  2010-04-20       Impact factor: 22.384

9.  Exploiting binding-induced changes in probe flexibility for the optimization of electrochemical biosensors.

Authors:  Ryan J White; Kevin W Plaxco
Journal:  Anal Chem       Date:  2010-01-01       Impact factor: 6.986

10.  NMR characterization of an engineered domain fusion between maltose binding protein and TEM1 beta-lactamase provides insight into its structure and allosteric mechanism.

Authors:  Chapman M Wright; Ananya Majumdar; Joel R Tolman; Marc Ostermeier
Journal:  Proteins       Date:  2010-05-01
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  18 in total

1.  Designing redox potential-controlled protein switches based on mutually exclusive proteins.

Authors:  Qing Peng; Na Kong; Hui-Chuan Eileen Wang; Hongbin Li
Journal:  Protein Sci       Date:  2012-08       Impact factor: 6.725

2.  GFP variants with alternative β-strands and their application as light-driven protease sensors: a tale of two tails.

Authors:  Keunbong Do; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2013-07-08       Impact factor: 15.419

3.  A combinatorial histidine scanning library approach to engineer highly pH-dependent protein switches.

Authors:  Megan L Murtaugh; Sean W Fanning; Tressa M Sharma; Alexandra M Terry; James R Horn
Journal:  Protein Sci       Date:  2011-08-03       Impact factor: 6.725

4.  The interplay between effector binding and allostery in an engineered protein switch.

Authors:  Jay H Choi; Tina Xiong; Marc Ostermeier
Journal:  Protein Sci       Date:  2016-06-24       Impact factor: 6.725

Review 5.  Protein conformational switches: from nature to design.

Authors:  Jeung-Hoi Ha; Stewart N Loh
Journal:  Chemistry       Date:  2012-06-11       Impact factor: 5.236

6.  The designability of protein switches by chemical rescue of structure: mechanisms of inactivation and reactivation.

Authors:  Yan Xia; Nina DiPrimio; Theodore R Keppel; Binh Vo; Keith Fraser; Kevin P Battaile; Chet Egan; Christopher Bystroff; Scott Lovell; David D Weis; J Christopher Anderson; John Karanicolas
Journal:  J Am Chem Soc       Date:  2013-12-06       Impact factor: 15.419

7.  Thermodynamic basis for engineering high-affinity, high-specificity binding-induced DNA clamp nanoswitches.

Authors:  Andrea Idili; Kevin W Plaxco; Alexis Vallée-Bélisle; Francesco Ricci
Journal:  ACS Nano       Date:  2013-11-20       Impact factor: 15.881

8.  Bioelectrochemical switches for the quantitative detection of antibodies directly in whole blood.

Authors:  Alexis Vallée-Bélisle; Francesco Ricci; Takanori Uzawa; Fan Xia; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2012-09-10       Impact factor: 15.419

9.  A Modular, DNA-Based Beacon for Single-Step Fluorescence Detection of Antibodies and Other Proteins.

Authors:  Simona Ranallo; Marianna Rossetti; Kevin W Plaxco; Alexis Vallée-Bélisle; Francesco Ricci
Journal:  Angew Chem Int Ed Engl       Date:  2015-09-04       Impact factor: 15.336

10.  A critical element of the light-induced quaternary structural changes in YtvA-LOV.

Authors:  Rang Lee; Jongsik Gam; Jayoung Moon; Seung-Goo Lee; Young-Ger Suh; Bong-Jin Lee; Jeeyeon Lee
Journal:  Protein Sci       Date:  2015-10-10       Impact factor: 6.725

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