Literature DB >> 20563223

NMR Determination of Protein pK(a) Values in the Solid State.

Heather L Frericks Schmidt1, Gautam J Shah, Lindsay J Sperling, Chad M Rienstra.   

Abstract

Charged residues play an important role in defining key mechanistic features in many biomolecules. Determining the pK(a) values of large, membrane or fibrillar proteins can be challenging with traditional methods. In this study we show how solid-state NMR is used to monitor chemical shift changes during a pH titration for the small soluble β1 immunoglobulin binding domain of protein G. The chemical shifts of all the amino acids with charged side-chains throughout the uniformly-(13)C,(15)N-labeled protein were monitored over several samples varying in pH; pK(a) values were determined from these shifts for E27, D36, and E42, and the bounds for the pK(a) of other acidic side-chain resonances were determined. Additionally, this study shows how the calculated pK(a) values give insights into the crystal packing of the protein.

Entities:  

Year:  2010        PMID: 20563223      PMCID: PMC2885713          DOI: 10.1021/jz1004413

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  41 in total

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4.  pK(a) values for side-chain carboxyl groups of a PGB1 variant explain salt and pH-dependent stability.

Authors:  Stina Lindman; Sara Linse; Frans A A Mulder; Ingemar André
Journal:  Biophys J       Date:  2006-10-13       Impact factor: 4.033

5.  Partial site-specific assignment of a uniformly (13)C, (15)N enriched membrane protein, light-harvesting complex 1 (LH1), by solid state NMR.

Authors:  Lei Huang; Ann E McDermott
Journal:  Biochim Biophys Acta       Date:  2008-01-26

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7.  Low-barrier hydrogen bonds and enzymic catalysis.

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8.  Temperature-dependent sensitivity enhancement of solid-state NMR spectra of alpha-synuclein fibrils.

Authors:  Kathryn D Kloepper; Donghua H Zhou; Ying Li; Kem A Winter; Julia M George; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2007-11       Impact factor: 2.835

9.  Solid-state NMR study and assignments of the KcsA potassium ion channel of S. lividans.

Authors:  Krisztina Varga; Lin Tian; Ann E McDermott
Journal:  Biochim Biophys Acta       Date:  2007-09-14

10.  Crystal polymorphism of protein GB1 examined by solid-state NMR spectroscopy and X-ray diffraction.

Authors:  Heather L Frericks Schmidt; Lindsay J Sperling; Yi Gui Gao; Benjamin J Wylie; John M Boettcher; Scott R Wilson; Chad M Rienstra
Journal:  J Phys Chem B       Date:  2007-12-04       Impact factor: 2.991

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  7 in total

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2.  Rapid automated determination of chemical shift anisotropy values in the carbonyl and carboxyl groups of fd-y21m bacteriophage using solid state NMR.

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3.  Deuterium-Enhanced Raman Spectroscopy for Histidine pKa Determination in a pH-Responsive Hydrogel.

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Journal:  Biophys J       Date:  2020-09-23       Impact factor: 4.033

4.  Site-specific resolution of anionic residues in proteins using solid-state NMR spectroscopy.

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5.  The molecular pH-response mechanism of the plant light-stress sensor PsbS.

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6.  Protonation State of an Important Histidine from High Resolution Structures of Lytic Polysaccharide Monooxygenases.

Authors:  Sanchari Banerjee; Sebastian J Muderspach; Tobias Tandrup; Kristian Erik Høpfner Frandsen; Raushan K Singh; Johan Ørskov Ipsen; Cristina Hernández-Rollán; Morten H H Nørholm; Morten J Bjerrum; Katja Salomon Johansen; Leila Lo Leggio
Journal:  Biomolecules       Date:  2022-01-24

7.  Site-Specific Internal Motions in GB1 Protein Microcrystals Revealed by 3D ²H-¹³C-¹³C Solid-State NMR Spectroscopy.

Authors:  Xiangyan Shi; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2016-03-18       Impact factor: 15.419

  7 in total

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