Literature DB >> 8009219

Low-barrier hydrogen bonds and enzymic catalysis.

W W Cleland1, M M Kreevoy.   

Abstract

Formation of a short (less than 2.5 angstroms), very strong, low-barrier hydrogen bond in the transition state, or in an enzyme-intermediate complex, can be an important contribution to enzymic catalysis. Formation of such a bond can supply 10 to 20 kilocalories per mole and thus facilitate difficult reactions such as enolization of carboxylate groups. Because low-barrier hydrogen bonds form only when the pKa's (negative logarithm of the acid constant) of the oxygens or nitrogens sharing the hydrogen are similar, a weak hydrogen bond in the enzyme-substrate complex in which the pKa's do not match can become a strong, low-barrier one if the pKa's become matched in the transition state or enzyme-intermediate complex. Several examples of enzymatic reactions that appear to use this principle are presented.

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Year:  1994        PMID: 8009219     DOI: 10.1126/science.8009219

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  131 in total

1.  Electrostatic stress in catalysis: structure and mechanism of the enzyme orotidine monophosphate decarboxylase.

Authors:  N Wu; Y Mo; J Gao; E F Pai
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

2.  An improved hydrogen bond potential: impact on medium resolution protein structures.

Authors:  Felcy Fabiola; Richard Bertram; Andrei Korostelev; Michael S Chapman
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

3.  Fast estimation of hydrogen-bonding donor and acceptor propensities: a GMIPp study.

Authors:  Albert Salichs; M López; V Segarra; Modesto Orozco; F Javier Luque
Journal:  J Comput Aided Mol Des       Date:  2002 Aug-Sep       Impact factor: 3.686

4.  Histidines, heart of the hydrogen ion channel from influenza A virus: toward an understanding of conductance and proton selectivity.

Authors:  Jun Hu; Riqiang Fu; Katsuyuki Nishimura; Li Zhang; Huan-Xiang Zhou; David D Busath; Viksita Vijayvergiya; Timothy A Cross
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-21       Impact factor: 11.205

5.  The role of hydrogen bonding in the enzymatic reaction catalyzed by HIV-1 protease.

Authors:  Joanna Trylska; Pawel Grochowski; J Andrew McCammon
Journal:  Protein Sci       Date:  2004-02       Impact factor: 6.725

6.  Complete set of glycosyltransferase structures in the calicheamicin biosynthetic pathway reveals the origin of regiospecificity.

Authors:  Aram Chang; Shanteri Singh; Kate E Helmich; Randal D Goff; Craig A Bingman; Jon S Thorson; George N Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-10       Impact factor: 11.205

7.  Field effects induce bathochromic shifts in xanthene dyes.

Authors:  Martha Sibrian-Vazquez; Jorge O Escobedo; Mark Lowry; Frank R Fronczek; Robert M Strongin
Journal:  J Am Chem Soc       Date:  2012-06-05       Impact factor: 15.419

8.  Determination of the ionization state of the active-site histidine in a subtilisin-(chloromethane inhibitor) derivative by 13C-NMR.

Authors:  T P O'Connell; J P Malthouse
Journal:  Biochem J       Date:  1996-07-01       Impact factor: 3.857

Review 9.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

10.  A neutron crystallographic analysis of T6 porcine insulin at 2.1 A resolution.

Authors:  Wakari Iwai; Taro Yamada; Kazuo Kurihara; Yuki Ohnishi; Yoichiro Kobayashi; Ichiro Tanaka; Haruyuki Takahashi; Ryota Kuroki; Taro Tamada; Nobuo Niimura
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-09-16
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