Literature DB >> 17899395

Temperature-dependent sensitivity enhancement of solid-state NMR spectra of alpha-synuclein fibrils.

Kathryn D Kloepper1, Donghua H Zhou, Ying Li, Kem A Winter, Julia M George, Chad M Rienstra.   

Abstract

The protein alpha-synuclein (AS) is the primary fibrillar component of Lewy bodies, the pathological hallmark of Parkinson's disease. Wild-type human AS and the three mutant forms linked to Parkinson's disease (A53T, A30P, and E46K) all form fibrils through a nucleation-dependent pathway; however, the biophysical details of these fibrillation events are not yet well understood. Atomic-level structural insight is required in order to elucidate the potential role of AS fibrils in Parkinson's disease. Here we show that low temperature acquisition of magic-angle spinning NMR spectra of wild type AS fibrils-greatly enhances spectral sensitivity, enabling the detection of a substantially larger number of spin systems. At 0 +/- 3 degrees C sample temperature, cross polarization (CP) experiments yield weak signals. Lower temperature spectra (-40 +/- 3 degrees C) demonstrated several times greater signal intensity, an effect further amplified in 3D 15N-13C-13C experiments, which are required to perform backbone assignments on this sample. Thus 3D experiments enabled assignments of most amino acids in the rigid part of the fibril (approximately residues 64 to 94), as well as tentative site-specific assignments for T22, V26, A27, Y39, G41, S42, H50, V52, A53, T54, V55, V63, A107, I112, and S129. Most of these signals were not observed in 2D or 3D spectra at 0 +/- 3 degrees C. Spectra acquired at low temperatures therefore permitted more complete chemical shift assignments. Observation of the majority of residues in AS fibrils represents an important step towards solving the 3D structure.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17899395     DOI: 10.1007/s10858-007-9189-z

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  45 in total

1.  Two-dimensional structure of beta-amyloid(10-35) fibrils.

Authors:  T L Benzinger; D M Gregory; T S Burkoth; H Miller-Auer; D G Lynn; R E Botto; S C Meredith
Journal:  Biochemistry       Date:  2000-03-28       Impact factor: 3.162

2.  Structural organization of alpha-synuclein fibrils studied by site-directed spin labeling.

Authors:  Ani Der-Sarkissian; Christine C Jao; Jeannie Chen; Ralf Langen
Journal:  J Biol Chem       Date:  2003-06-18       Impact factor: 5.157

3.  High-resolution solid-state NMR spectroscopy of the prion protein HET-s in its amyloid conformation.

Authors:  Ansgar B Siemer; Christiane Ritter; Matthias Ernst; Roland Riek; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2005-04-15       Impact factor: 15.336

4.  Protein structure determination by high-resolution solid-state NMR spectroscopy: application to microcrystalline ubiquitin.

Authors:  Stephan G Zech; A Joshua Wand; Ann E McDermott
Journal:  J Am Chem Soc       Date:  2005-06-22       Impact factor: 15.419

5.  Band-selective 13C homonuclear 3D spectroscopy for solid proteins at high field with rotor-synchronized soft pulses.

Authors:  Donghua H Zhou; Kathryn D Kloepper; Kem A Winter; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2006-04       Impact factor: 2.835

6.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Amyloid fibril formation by A beta 16-22, a seven-residue fragment of the Alzheimer's beta-amyloid peptide, and structural characterization by solid state NMR.

Authors:  J J Balbach; Y Ishii; O N Antzutkin; R D Leapman; N W Rizzo; F Dyda; J Reed; R Tycko
Journal:  Biochemistry       Date:  2000-11-14       Impact factor: 3.162

9.  Supramolecular structure in full-length Alzheimer's beta-amyloid fibrils: evidence for a parallel beta-sheet organization from solid-state nuclear magnetic resonance.

Authors:  John J Balbach; Aneta T Petkova; Nathan A Oyler; Oleg N Antzutkin; David J Gordon; Stephen C Meredith; Robert Tycko
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

10.  Chemical shift referencing in MAS solid state NMR.

Authors:  Corey R Morcombe; Kurt W Zilm
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

View more
  24 in total

1.  Solid-state NMR characterization of gas vesicle structure.

Authors:  Astrid C Sivertsen; Marvin J Bayro; Marina Belenky; Robert G Griffin; Judith Herzfeld
Journal:  Biophys J       Date:  2010-09-22       Impact factor: 4.033

Review 2.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

3.  Structural and dynamical characterization of tubular HIV-1 capsid protein assemblies by solid state nuclear magnetic resonance and electron microscopy.

Authors:  Bo Chen; Robert Tycko
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

4.  Molecular conformation and dynamics of the Y145Stop variant of human prion protein in amyloid fibrils.

Authors:  Jonathan J Helmus; Krystyna Surewicz; Philippe S Nadaud; Witold K Surewicz; Christopher P Jaroniec
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-24       Impact factor: 11.205

5.  Conserved core of amyloid fibrils of wild type and A30P mutant α-synuclein.

Authors:  Min-Kyu Cho; Hai-Young Kim; Claudio O Fernandez; Stefan Becker; Markus Zweckstetter
Journal:  Protein Sci       Date:  2011-02       Impact factor: 6.725

6.  Phosphorylation at S87 is enhanced in synucleinopathies, inhibits alpha-synuclein oligomerization, and influences synuclein-membrane interactions.

Authors:  Katerina E Paleologou; Abid Oueslati; Gideon Shakked; Carla C Rospigliosi; Hai-Young Kim; Gonzalo R Lamberto; Claudio O Fernandez; Adrian Schmid; Fariba Chegini; Wei Ping Gai; Diego Chiappe; Marc Moniatte; Bernard L Schneider; Patrick Aebischer; David Eliezer; Markus Zweckstetter; Eliezer Masliah; Hilal A Lashuel
Journal:  J Neurosci       Date:  2010-03-03       Impact factor: 6.167

7.  Structured regions of α-synuclein fibrils include the early-onset Parkinson's disease mutation sites.

Authors:  Gemma Comellas; Luisel R Lemkau; Andrew J Nieuwkoop; Kathryn D Kloepper; Daniel T Ladror; Reika Ebisu; Wendy S Woods; Andrew S Lipton; Julia M George; Chad M Rienstra
Journal:  J Mol Biol       Date:  2011-06-21       Impact factor: 5.469

8.  Electron paramagnetic resonance spectroscopy measures the distance between the external β-strands of folded α-synuclein in amyloid fibrils.

Authors:  Irina Karyagina; Stefan Becker; Karin Giller; Dietmar Riedel; Thomas M Jovin; Christian Griesinger; Marina Bennati
Journal:  Biophys J       Date:  2011-07-06       Impact factor: 4.033

9.  Solid-state NMR evidence for inequivalent GvpA subunits in gas vesicles.

Authors:  Astrid C Sivertsen; Marvin J Bayro; Marina Belenky; Robert G Griffin; Judith Herzfeld
Journal:  J Mol Biol       Date:  2009-02-14       Impact factor: 5.469

10.  Solid-state NMR spectroscopy reveals that water is nonessential to the core structure of alpha-synuclein fibrils.

Authors:  Kathryn D Kloepper; Kevin L Hartman; Daniel T Ladror; Chad M Rienstra
Journal:  J Phys Chem B       Date:  2007-11-07       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.